Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02724 ATGTCCTTTAATGGGAAACGACTACTTGTAGATGAGATGGAATTCTTCTCCCATAAGAAGACGAAGAACGTTCATCAACATTATGATGTAGAAAGAACGGAGCGTCATCATGTAGATACTAGTTTAGATCTCCTTACCGGTGGCAACAAATTGACTGTTGATGATGGAGCTTCATACACCACGGATAATAAGAGAAATGAgTTGGATGCCTTGCTAGCTGAGTTGCACCAGATGAATGTTGAAAACCAACGCTTGAGAGAGATGGTTAACCAGGTCAACAATAGCTACAATTCCCTTCACATGCAGATTAAGACATTAGCGCACAGGCCACAGAGTCGTGCGGATGATGGAGCTACAGGTGAGAAAGGAAGCATGAGTTCAGGGGCATTTATAGAAATGAGTCTTGCTGGTTTTGCTCCAAAGGATGAGCCTTCAGAAGGGAAATTTCCCAAAAGTGGAAGCTTTGAATTAATGGAGTTTAAGAGTCAGCAGATTAATTTCAATGAAGATCAGTTGAAGGCAGATAATAAGATGGGTTCTGGAAAGAATGGTGCAAAAGCAAGAATTAGGGAAGAAAGCCCAGAACAAGCAACATTTTCTGGGTGGTTCTCTAGAAAAGCCCCtaaattcaattcttttatGGATGATCAAGCATCAGAAGCGATATCAATGATCAAGAAAGCTCGTGTATCGGTTCGAGCACATTCAGAGTCCTCAATGATTCCAGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGCCCACGATCTTATTATCGTTGCACCATGGGGACTGGTTGTCCAGTTCGTAAACAAGTACAAAGGTGTGCACAAGATAGAAGTGTGTTAATTACTACATATGAAGGCCAGCATAACCATCCATTGCCTCCTGCTGCGAAGGCAATGGCATCCACCACATCAGCAGCTACTTCAATGCTTCTTTCAGGATCaatgtcaagcaaggattgcCTAATGAACCCTAACATATTAGAAAGTGCTTCACTTCCGTGCTCACAGAACTTGGCAACCCTTTCAGCTTCAGCTCCATTTCCCACTATCACATTAGATCTCACTGAAAAAGCTCCCAATAATGCCTCACAGCGCCAAAGGGCCCCACAAGAGATAGTACTTAGCTTGCTATCTCCAATCTTGGCTCAGAAGTTCAATTTGCTGGGAATGGAAACACCAAACGCATTTGCAGACACAGTAAGTGCAGCCACGGCTGCTATCACCGCAGACCCAAATTTTGCAGCAGCTCTTGTGGCCGCTGTAACATCTATCATTGGATATTCACATTCAAACAGCAATGGTGCCAATAATACTAGTGGAAACCATGCTTG 1358 0.4249 MSFNGKRLLVDEMEFFSHKKTKNVHQHYDVERTERHHVDTSLDLLTGGNKLTVDDGASYTTDNKRNELDALLAELHQMNVENQRLREMVNQVNNSYNSLHMQIKTLAHRPQSRADDGATGEKGSMSSGAFIEMSLAGFAPKDEPSEGKFPKSGSFELMEFKSQQINFNEDQLKADNKMGSGKNGAKARIREESPEQATFSGWFSRKAPKFNSFMDDQASEAISMIKKARVSVRAHSESSMIPDGCQWRKYGQKMAKGNPCPRSYYRCTMGTGCPVRKQVQRCAQDRSVLITTYEGQHNHPLPPAAKAMASTTSAATSMLLSGSMSSKDCLMNPNILESASLPCSQNLATLSASAPFPTITLDLTEKAPNNASQRQRAPQEIVLSLLSPILAQKFNLLGMETPNAFADTVSAATAAITADPNFAAALVAAVTSIIGYSHSNSNGANNTSGNHA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02724 452 Gene3D WRKY domain 226 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva12g02724 452 MobiDBLite consensus disorder prediction 174 196 - -
Bva12g02724 452 SMART WRKY_cls 241 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g02724 452 Coils Coil 61 95 - -
Bva12g02724 452 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 442 IPR044810 GO:0003700
Bva12g02724 452 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g02724 452 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 1 442 - -
Bva12g02724 452 Pfam WRKY DNA -binding domain 243 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g02724 452 SUPERFAMILY WRKY DNA-binding domain 234 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02724 Bva-Chr12 19885875 19888701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02724 7 445 WRKY Transcription Factor Family AT1G62300 43.205 4.91e-97 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva12g02724 WRKY 1.2e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00479 09 2541899 2544505 Bva12g02724 12 19885875 19888701 ECH
Bva07g02164 07 18193687 18196139 Bva12g02724 12 19885875 19888701 ECH
Bva12g02724 12 19885875 19888701 Bva14g00627 14 2945691 2948103 ECH
Bva12g02724 12 19885875 19888701 Bva13g00528 13 2396866 2399356 ECH
Bva12g02724 12 19885875 19888701 Bva12g02724 12 19885875 19888701 ECH