Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02708 ATGGGAAGGGCCAGAGGTGCCGCGGCTGTTAAACTGGTGGCGGCGGATGCGGTGGCGATTGAGCTTAATGGATCCGGGTCGAGGACAGTTTTAAAAGAGCCGAGGTACCGGGGTGTCAGGAAGAGACCGTGGGGGAGATTCGCCGCCGAGATCAGAGACCCGTTGAAGAAAGCTCGGGTCTGGCTAGGCACCTTTGACTCAGCCGAAGAAGCGGCTCGAGCATACGACGCCGCTGCTCGGACCCTCCGTGGACCCAAAGCCAAAACCAATTTCCCTCTATctccttcttctctctctcctttctGTTACCATAACAACCAGAACGATCCCTTTTTAGATCACCGGTTGTACGCCGCCAATGGTGGTTACCAAGAACACCAGATTAATCCCCAGAGACCCACCTCCAGCAGCATGAGCAGCACTGTTGAATCCTTCAGTGGGCCCCGCCCTCCGTCAAACACTCTTCAACCGCCGTCCGCGACGGTGACGACCGCTGCAGTAACCGCACGGAGATACCCTCGCACGCCGCCAGTTGTGCCGGAGGATTGCCACAGTGACTGCGATTCGTCGTCGTCTGTTGTTGATGACGACGGCGATATCGCTTCGTCGTCGTTTCGCCAACCGTTGCCGTTCGATCTTAATTTCCCACCGTTGGAAGGAGCTGAGTTGGCGGGTGATGATCTACACTGCACCGCGCTCTGCCTCTG 707 0.5587 MGRARGAAAVKLVAADAVAIELNGSGSRTVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSPSSLSPFCYHNNQNDPFLDHRLYAANGGYQEHQINPQRPTSSSMSSTVESFSGPRPPSNTLQPPSATVTTAAVTARRYPRTPPVVPEDCHSDCDSSSSVVDDDGDIASSSFRQPLPFDLNFPPLEGAELAGDDLHCTALCL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02708 235 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Bva12g02708 235 MobiDBLite consensus disorder prediction 126 159 - -
Bva12g02708 235 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Bva12g02708 235 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Bva12g02708 235 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 215 - -
Bva12g02708 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 5 215 - -
Bva12g02708 235 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Bva12g02708 235 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Bva12g02708 235 MobiDBLite consensus disorder prediction 173 206 - -
Bva12g02708 235 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Bva12g02708 235 CDD AP2 34 94 IPR001471 GO:0003700|GO:0006355
Bva12g02708 235 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02708 Bva-Chr12 19808069 19809449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02708 1 235 AP2-EREBP Transcription Factor Family AT3G20310 60.392 1.39e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva12g02708 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02708 K09286 - pvy:116145234 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00709 12 8637781 8639105 Bva12g02708 12 19808069 19809449 BWGD
Bva12g02708 12 19808069 19809449 Bva12g02708 12 19808069 19809449 ECH