Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02707 ATGGGTGACGAAGAGGAGAGGCTTCTGGAGCAGCAACTCGAGCTTCAATTGCAGGAACAGAAGGAATCCCTTTCTGCTATCAAAGAAGCTTTGGCTTCTGATCCAGCCAACCCTGAGCTTCTCGCGTTTCATGAGGAGCTTGTTCAGGCTATCAAGGATTCAGAGGAAGGACTTTTTCACTTAAAACGTGCACGGTTATTACGTGAAGCAGATGCAGTGCTGCATACAACTAATATTTTTGCTGAAGAAGACAAGGTGGAGCCCCTTGATCCAACAGATGCTGAACCAGAACTGCTAGAGGAACAAAGTTATTCTCTTGGATCAAAATGTAGATTCCGTCACACTGATGGGCGTTGTTATAATGGTCAAGTAGTGCAGTTGAATAATTCAGCTGCAAAGATTTCATTCCTTACTCCTACATCAGAGAATATGCTGATTTGCAAGTTCTTTCTACAACAACGATGTCGATTTGGTTCTAATTGTCGCTTATCACATGGAGTTGATGTTCCATTGTCCTCCCTGAAGAAGTACGTTCCAACAATCTGGAAGCAGTCTCTGGTAGGGTCAAGTATATGGGCAATCCCAAATGCTAATGCAGGAATCTGGAGGGAAGCCGAGCTTGAGTCCTGGGATGAAGAAGTTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGTAGTTCTGTGAAGGTTGGGGTTGAAGCTCTAGCATTATCTGAATATGCCGAAGTGAGTGATGACGAGAGTGATTCCACCAACGAACAATCTGATTCTAGCTATGATGAAGAAGAGGAGTCTCAAGGTGTAGGATTTCTTGAAAGTACCAACATGCTGAGGGGCATTCAGACAGAAACTGCTACATTTGCTAAGTGGGAGAACCATACTAGGGGGATAGCTTCCAAAATGATGGCTAATATGGGTTACCGAGAAGGAATGGGTTTAGGTGCATCTGGTCAGGGGATGCTAAATCCCATCCCTGTGAAGGTCCTCCCGGCAAAGCAATCCTTAGATCATGCTCTTGAGTCTCAGAAAGGTGAAGAGAGCAAAGAGGATCGAGTAAAGAAACGGAGCAGAGGCGGTAAGAGAAAACGCGATAAGAAATTGGCAGAAGCAATTCGTGtggcaaaagaagaagaggaatcAACATCAGATGTCTTTACACTAATAAATAGCCAACTTGCAATACACGGTGAAGCTTTAAATGGCGGATCAATGAAGAAGCAGCAAAACAAAGGTTCGGCAGATGGCAAAAAGGTTGATAGGCGGGCTTTGATTGCTTATGAGGATGAGGTGAAGGACTTGAAGATGCGGGTTGAGAAGCTGGAAGAAATGgttaatagaaacaaaaaagagaaggttGTTTATGAGGCTGCTATGAGGAAATTAGTTGAGACCCGCAAGGCATTAGCAGAGGCTGAAGCAGTTCATGCTTCTGCATCAAATGCAGTTGttagcaaagaaaaagaaaagagatggcTCAAGTTTTA 1484 0.4218 MGDEEERLLEQQLELQLQEQKESLSAIKEALASDPANPELLAFHEELVQAIKDSEEGLFHLKRARLLREADAVLHTTNIFAEEDKVEPLDPTDAEPELLEEQSYSLGSKCRFRHTDGRCYNGQVVQLNNSAAKISFLTPTSENMLICKFFLQQRCRFGSNCRLSHGVDVPLSSLKKYVPTIWKQSLVGSSIWAIPNANAGIWREAELESWDEEVGVGQVVFRDDGSSVKVGVEALALSEYAEVSDDESDSTNEQSDSSYDEEEESQGVGFLESTNMLRGIQTETATFAKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKGEESKEDRVKKRSRGGKRKRDKKLAEAIRVAKEEEESTSDVFTLINSQLAIHGEALNGGSMKKQQNKGSADGKKVDRRALIAYEDEVKDLKMRVEKLEEMVNRNKKEKVVYEAAMRKLVETRKALAEAEAVHASASNAVVSKEKEKRWLKF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02707 494 SMART G-patch_5 292 338 IPR000467 GO:0003676
Bva12g02707 494 MobiDBLite consensus disorder prediction 241 267 - -
Bva12g02707 494 MobiDBLite consensus disorder prediction 338 366 - -
Bva12g02707 494 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Bva12g02707 494 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Bva12g02707 494 Coils Coil 1 30 - -
Bva12g02707 494 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 494 - -
Bva12g02707 494 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Bva12g02707 494 Coils Coil 423 474 - -
Bva12g02707 494 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Bva12g02707 494 Gene3D - 107 178 - -
Bva12g02707 494 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Bva12g02707 494 MobiDBLite consensus disorder prediction 241 275 - -
Bva12g02707 494 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Bva12g02707 494 MobiDBLite consensus disorder prediction 338 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02707 Bva-Chr12 19802077 19806171 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva12g02707 G-patch 8.9e-13 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02707 - - gmx:100796284 728.783