Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02662 ATGGAATCTGATCTTGGCAAGCTCTTCATTGGAGGAATTTCCTGGGATACTGATGAGGAGCGTCTCAAGGAATATTTTGGGAAGTATGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGCACAACAGGTCGTGCTcgtggttttggttttgttgtcTTTGCTGATCTTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCATACTATTAATCGACAATCTGGTGGTGTCCATGGCTCTCCTGGTCCTGGACGCacaaaaaagatttttgttGGAGGTTTACCATCAACAATCACTGAAAGTGACTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTAATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAACGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAGCTTTCTCCCGGGCTGAGCCGGAGCCCGTTGATAGGATATAACTATGGTTTGGGTAGGGCCAACAGCTACCTAAACAGTTATGCTCAGGGTTTTAATATGAGCCCTGTTGGAGGCTATGGAGTCAGGATGGATGGTAGGTTTAGTCCAGTTACTAGTGGTAGAAGTGGGTTCTCCCCATTTGGCACAACTGCTTATGGGATGGGAGTGAATTTGGATGCAGGATTGAGCCCAAGCTATGGTGGGACTTCCAACTATGGGAGTAATCTAGGATATGGTCGCATATTTAGTCCTTTCTATAGTGGCAACTCTGGCAGATATAGTACTCCCATTGGCTACAGTGGGGGTAATGGGAGAGGCGATTCTCTTATGAACTCAACTTCTCGAAATGTCTGGGGAAATGGGGCCCTTAATAATGCCAATAACCCTGTCAGCCCAGGTGCTTACTTTGGATCTGGAAGTGGGGCTTTTGGTATTACAATTGGAAATGGTGGCACAAACTGGGGTCAATCCGTTCCAAACCAGAGTGGAGGGAATGCTTCTGGCTATGCTACTGGGAATAGTGTTTATGGAGGTGGAGACAGCAGCTTCGGGTTAGTAGGAGGCAGCTATGGAAGAACTAGCAGTACTGGTGTAACTCCATCCTCTACTTTTTCTGCATCAACTGGTGGTTTTGAAGGGTCCTATGGGGACTTATACCGCAGTGGTTCAGTTTATGGTGACTCAACTTGGCGATCAGCTGCTTCTGACCTAGATGGTTCAGGCTCATTTGGATATGGACTTGGTGGTATGGCTTCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAGTGTTACAAATAGACAATCTAATAGAGGAATTGCTGCCTA 1433 0.4445 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADLAVAERVIMDKHIIDGRTVEAKKAVPRDDQHTINRQSGGVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGLSRSPLIGYNYGLGRANSYLNSYAQGFNMSPVGGYGVRMDGRFSPVTSGRSGFSPFGTTAYGMGVNLDAGLSPSYGGTSNYGSNLGYGRIFSPFYSGNSGRYSTPIGYSGGNGRGDSLMNSTSRNVWGNGALNNANNPVSPGAYFGSGSGAFGITIGNGGTNWGQSVPNQSGGNASGYATGNSVYGGGDSSFGLVGGSYGRTSSTGVTPSSTFSASTGGFEGSYGDLYRSGSVYGDSTWRSAASDLDGSGSFGYGLGGMASDDPVKSSEGYIGNYSVTNRQSNRGIAA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02662 477 SUPERFAMILY RNA-binding domain, RBD 105 201 IPR035979 GO:0003676
Bva12g02662 477 Gene3D - 6 88 IPR012677 -
Bva12g02662 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bva12g02662 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Bva12g02662 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Bva12g02662 477 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Bva12g02662 477 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Bva12g02662 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Bva12g02662 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bva12g02662 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bva12g02662 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bva12g02662 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Bva12g02662 477 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 477 - -
Bva12g02662 477 MobiDBLite consensus disorder prediction 82 101 - -
Bva12g02662 477 Gene3D - 105 185 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02662 Bva-Chr12 19569594 19573475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02662 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.034 5.71e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02662 K14411 - gmx:100805131 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00650 12 8267408 8271605 Bva12g02662 12 19569594 19573475 BWGD
Bva12g02662 12 19569594 19573475 Bva12g02662 12 19569594 19573475 ECH