Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02650 ATGAACCTAGATTGGGAACAGGCACTGAATGAGTATCAGAGTGTTATAGCCTCGGGAACCAAGAGAATGCAAATAAAAGCCATAAAAATGCTAGCCCAATTCTCTAAACGTGCTCCTGAAGATGTGTTAGCTAGCAGCATACCCACCCTCACGGGGATTCTTGGTCGTGAACCTTCAAATGATTTAGATCGTTCTCTGCAAAAAGCTGCTGCTTATTGCTTGAAGTGTATAGCTAGTAGAGGTGATGGTGGGTTAGCAAAAGAAATATCCAGACATGATGGAGCACATTGTTTGGTAAAACTCTTGCCACATTCTGATGGAAAATTTCAGGAAGTTTTGATCAAATGTTTGGCCATAATTGTCTCTTTTTGTGATGAGAGTCGTGCAATTGTTGATGAGGATGAAGGATTAGAAATTATCATCCGTTTGTTAAATTCGCGCACTGATGATGTTAGAGGGTAtttgttagaaattttgaGTGCATTGGCGATGCTGAGGGAGGTTAGGAGAGATATGACTAGATTAGGAGCTCTTCGATATCTAGTAGAGGCTCTTAGTTGTGGCAGTATGGTTTCTAGGGAAAGAGCTTGTCAAGCAATTGGATTTCTTGGAGTCGCAAGACGAGCCAGGCGTATGCTTGTTGAGTTGGGAGTGATACCAAAGCTTGTTGAGTTGTTTCGTTATGGAGATGGAACCACAAAACTCGTAGCAGGTAATACTATTGGTGTAATCTCTGCTCATGCAAATTACATTAGACCAGTTGCTCAAGCTGGGGCTATCCCCCTTTATGCTGAGCTTCTTCAAGGTCCAGGACCTAGTGGTAAGGAGATTGCTGAGGATGCTTTCTGTATATTAGCTGTTGCAGAGGATAACGCTGTTGAGATTGCTGGATATTTGACGAGAATCCTTAGAGAAGGTGATGATGAAGCAAAGGCAGCAGCTGCTGATGTGATATGGGATCTCTCAGGGTATAAGCACTCAATACCCGTGATCCGGGACTCCGGTGCAATTCCAATCCTGGTTGAGCTTCTGGGGAGTGGAAGTCAAGAGGTAAAGGAGAATGTCTCTGGAGCAATAGCTCAGCTGAGCTATGATGGAGCAGATAGAATGGAACTTGCGGAGGCAGGGGCAATTCCACTTCTCACACACATGCTGCATGACGAATCCGAGGAGTTAAAGAACAATGTTGCCGAGGCTATTGTCAATTTTTCCGAAGATCCATTGTACCGTGATAGAGTATCTGACGTAGTTAATGATCTTTCATTCAGGAACATGCAGAGCAtccttaaccatgttcgtgcTTCAAATGAACATATGAGTAGATCACTGCGAAGGATGAGTATTGAGCAGTTCACTTCCAACCCTAGTATTGTGTA 1376 0.4259 MNLDWEQALNEYQSVIASGTKRMQIKAIKMLAQFSKRAPEDVLASSIPTLTGILGREPSNDLDRSLQKAAAYCLKCIASRGDGGLAKEISRHDGAHCLVKLLPHSDGKFQEVLIKCLAIIVSFCDESRAIVDEDEGLEIIIRLLNSRTDDVRGYLLEILSALAMLREVRRDMTRLGALRYLVEALSCGSMVSRERACQAIGFLGVARRARRMLVELGVIPKLVELFRYGDGTTKLVAGNTIGVISAHANYIRPVAQAGAIPLYAELLQGPGPSGKEIAEDAFCILAVAEDNAVEIAGYLTRILREGDDEAKAAAADVIWDLSGYKHSIPVIRDSGAIPILVELLGSGSQEVKENVSGAIAQLSYDGADRMELAEAGAIPLLTHMLHDESEELKNNVAEAIVNFSEDPLYRDRVSDVVNDLSFRNMQSILNHVRASNEHMSRSLRRMSIEQFTSNPSIV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02650 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
Bva12g02650 458 Gene3D - 248 436 IPR011989 -
Bva12g02650 458 Pfam Armadillo/beta-catenin-like repeat 328 363 IPR000225 GO:0005515
Bva12g02650 458 Gene3D - 4 247 IPR011989 -
Bva12g02650 458 SMART arm_5 247 287 IPR000225 GO:0005515
Bva12g02650 458 SMART arm_5 365 405 IPR000225 GO:0005515
Bva12g02650 458 SMART arm_5 35 79 IPR000225 GO:0005515
Bva12g02650 458 SMART arm_5 124 164 IPR000225 GO:0005515
Bva12g02650 458 SMART arm_5 206 246 IPR000225 GO:0005515
Bva12g02650 458 SMART arm_5 165 205 IPR000225 GO:0005515
Bva12g02650 458 SMART arm_5 324 364 IPR000225 GO:0005515
Bva12g02650 458 PANTHER U BOX DOMAIN-CONTAINING 1 456 - -
Bva12g02650 458 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 1 456 - -
Bva12g02650 458 SUPERFAMILY ARM repeat 5 413 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02650 210 413 U-box Gene Family AT2G23140 27.488 1.34e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02650 - - gmx:100819735 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02650 12 19520414 19522582 Bva12g02650 12 19520414 19522582 ECH