Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02647 ATGTCATTCTTTGACAGTACTCCGAGTGGGAGAATCCTTAATAGAGCCTCTACTGACCAAAGTGCTTTAGATATGGCAATACCAAACCTAGTAGGCTCATTTTCCTTAGCTCTGGTAATGCTCTTGGGAAATATTGCTGTGATGTCTCAAGTAGCTTGGCAGGTTTTCATAGCATTTATTCCTGTGATTGCAGCTTGCGTATGGCACCAGCAATACTACTCCCCGGCAGCACGAGAATTGGCACGATTAGTTGGTACATGCCAAGCTCCAGTTATACAACATTTTGCCGAAAGCATTTCAGGATCAATGACCATCAGAAGTTTTGACCAAGAATCAAGATTTCAGgacataaatatgaaattgataGACAGATACTCCCAACCCAAATTATACACTGCCTCTGCGATAGAATGGCTGTGCTTCAGATTGGATCTGCTATCCTCCATCACATTTGCCttctgtttgattttcttgGTGTCTTTTCCTGATGCAATCATCGCTCCTGGCATTGCTGGTTTGGCTGTGACATATGGACTGAGCCTAAACTCATTGCAATTTAGGATAATTTGGTTTCTTTGTAATATGGAGAACAAAATTATATCAGCAGAAAGGATACTTCAGTACACCAGTATTCCAAGTGAGCCTCCTTTAGTAATAGAAGAAAACCATCCACATTGTTCTTGGCCATCCTCTGGAGAGATCCATGTCCAGGATTTACAGGTTTGGTATGCTCCTCACTTGCCTCTTGTTTTGCGTGGCCTTACCTGCACTTTCAATGCCGGAGGAAAAACTGGCATAGTGGGGAGAACTGGCAGTGGAAAATCAACACTGGTGCAGACACTTTTCCGAATGGTTGAGCCTGCTTCTGGTCAAATAATGATAGATGGCATCAGCATCTCTTCGATTGGGCTACACGATTTACGGTCAAGACTGAGTATTATTCCTCAGGATCCAACTATGTTTGAAGGGACTGTAAGAAGTAATCTAGACCCATTGGAAGAATACACAGATGAAAAAATTTGGGAGGCTTTAGATATGTGCCAACTTGGAGATgaagtgagaaagaaagaagggaagCTAGACTCCATAGTTACCGAGAATGGAGAAAACTGGAGCATGGGACAGAGGCAACTGGTCTGCCTCGGCCGCGTTCTGCTTAAGAAAAGCAAAATCTTGGTGCTTGATGAAGCAACTGCATCAGTTGACACAGCCACagataatattattcagaAAACTATCAAGCAGCATTTTTCAGAATGCACAGTCATTACGATTGCACACAGAATAACTTCTATCCTTGACAGTGACAtggttttatttctaaatcaaGGGCTTATTGAGGAGTATGATTCACCCAAGacattactaaaaaataaatcttcatcTCTTGCTCGACTAGTAGCTGAATACACACAGAGAGATCAGACTCAGGATTTGAAATGTTA 1445 0.3958 MSFFDSTPSGRILNRASTDQSALDMAIPNLVGSFSLALVMLLGNIAVMSQVAWQVFIAFIPVIAACVWHQQYYSPAARELARLVGTCQAPVIQHFAESISGSMTIRSFDQESRFQDINMKLIDRYSQPKLYTASAIEWLCFRLDLLSSITFAFCLIFLVSFPDAIIAPGIAGLAVTYGLSLNSLQFRIIWFLCNMENKIISAERILQYTSIPSEPPLVIEENHPHCSWPSSGEIHVQDLQVWYAPHLPLVLRGLTCTFNAGGKTGIVGRTGSGKSTLVQTLFRMVEPASGQIMIDGISISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEKIWEALDMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQKTIKQHFSECTVITIAHRITSILDSDMVLFLNQGLIEEYDSPKTLLKNKSSSLARLVAEYTQRDQTQDLKC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02647 481 CDD ABCC_MRP_domain2 232 452 - -
Bva12g02647 481 Pfam ABC transporter transmembrane region 1 159 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g02647 481 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 476 - -
Bva12g02647 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 460 IPR027417 -
Bva12g02647 481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 197 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g02647 481 Gene3D ABC transporter type 1, transmembrane domain 1 215 IPR036640 GO:0005524|GO:0016021
Bva12g02647 481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 234 468 IPR003439 GO:0005524
Bva12g02647 481 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 476 - -
Bva12g02647 481 Pfam ABC transporter 251 399 IPR003439 GO:0005524
Bva12g02647 481 SMART AAA_5 260 445 IPR003593 -
Bva12g02647 481 Gene3D - 217 470 IPR027417 -
Bva12g02647 481 SUPERFAMILY ABC transporter transmembrane region 1 215 IPR036640 GO:0005524|GO:0016021
Bva12g02647 481 CDD ABC_6TM_ABCC_D2 1 209 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02647 Bva-Chr12 19511930 19514903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02647 209 467 Calmodulin-binding Proteins AT2G36910 29.119 6.81e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02647 - K05666 mtr:MTR_3g056645 776.548