Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02628 ATGGATTCCAGTTCCAATCCCACTGAATCAGAGGAAGTCTTTTTCTGGAAACCCTGCATTTTTCCTTCCGGAAACCTCTTGAAAGTCCTGTTCCTCCTCCTCCGCAATGGTGCAAATGAGCCCTTGCTGTCGCAGGCACAGGATTCTGAAGGTCAAAATACTAAAAGGCGGTTAAACAGAAGAAGGTATCTTCGCAGTAAAAGTGCTCCCCTTGCAGAACTTGCTCTTCCAGAGAAAAATGGCATTGGCTCAATTTCACGTTACCAGTCCATTTTTGGCAATTTACATCCAAGTTTTAGAAAAGTGGTTATATACCTTGCAACATATTTAGGTGTAGGAGCTTTAATCTTCTATCTTGTTAGGAATCAGATCGAGGGGAAGAAAACTGATGGAATTCTTGACGCTGTATATTTTACAATTGTGACAATGACCACTGTTGGATATGGGGACCTTGTGCCCAATAGTGCCCTTACAAAACTACTCGCCTGTGGTTTCGTCTTCACAGGAATGGCATTGGTTGGACTAATCCTAAGCAACACAGCAGACTACCTGGTTGAGAAACAGGAAGTTTTGCTAGTTAAAGCTTTAAACATGCGAAAAAAGCTCGGCGAAACTGATATTCTGAAGCAGGTTGAGATCAACAAAACAAGATACAAacttattgttgttttttcccttctcttgGCACTCATTTTAGCAGGGACAACCTTTTTAGCCACTGTAGAGAAATTAAGTATTGTGGATTCCTTCTATTGCGTTTGTTCTACTCTCACAACATTGGGTTATGGCGATAAAAGTTTCTCAACTCTAGCAGGAAGAATTTTTGCTGTGTTTTGGATATTGACAGGCACTATTTGCTTGGCTCAGCTTTTCCTCTATGTTGCTGAGCTAAACGCTGAAACCAGACAAAAGGCACTTGTAAGGTGGGTTCTCACAAGGAAGATGACCTATCTAGACTTGGAGGCAGCAGATCTTGATGATGATGGAACTGTGGGGCCCGCTGAATTTGTTATCTATAAGCTGAAAGAGATGGGGAAAATAAGTCAAGATGATGTTTCAGCTATATTGCAGGAGTTTGAAGAGCTTGATGTTGATCAATCTGGTAGCCTGTCAGTTTCTGATATAGCACTTGCTCAGTCATCTTA 1145 0.407 MDSSSNPTESEEVFFWKPCIFPSGNLLKVLFLLLRNGANEPLLSQAQDSEGQNTKRRLNRRRYLRSKSAPLAELALPEKNGIGSISRYQSIFGNLHPSFRKVVIYLATYLGVGALIFYLVRNQIEGKKTDGILDAVYFTIVTMTTVGYGDLVPNSALTKLLACGFVFTGMALVGLILSNTADYLVEKQEVLLVKALNMRKKLGETDILKQVEINKTRYKLIVVFSLLLALILAGTTFLATVEKLSIVDSFYCVCSTLTTLGYGDKSFSTLAGRIFAVFWILTGTICLAQLFLYVAELNAETRQKALVRWVLTRKMTYLDLEAADLDDDGTVGPAEFVIYKLKEMGKISQDDVSAILQEFEELDVDQSGSLSVSDIALAQSS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02628 381 PANTHER TWO PORE POTASSIUM CHANNEL A 53 375 - -
Bva12g02628 381 ProSitePatterns EF-hand calcium-binding domain. 324 336 IPR018247 -
Bva12g02628 381 ProSitePatterns EF-hand calcium-binding domain. 363 375 IPR018247 -
Bva12g02628 381 PRINTS Two pore domain K+ channel signature 329 338 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bva12g02628 381 PRINTS Two pore domain K+ channel signature 255 283 IPR003280 GO:0005267|GO:0016020|GO:0071805
Bva12g02628 381 Gene3D - 202 307 - -
Bva12g02628 381 SUPERFAMILY EF-hand 320 376 IPR011992 -
Bva12g02628 381 SUPERFAMILY Voltage-gated potassium channels 208 317 - -
Bva12g02628 381 Pfam Ion channel 105 185 IPR013099 -
Bva12g02628 381 Pfam Ion channel 226 297 IPR013099 -
Bva12g02628 381 SUPERFAMILY Voltage-gated potassium channels 85 199 - -
Bva12g02628 381 Gene3D - 96 190 - -
Bva12g02628 381 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 53 375 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02628 Bva-Chr12 19387320 19389737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02628 91 381 Ion Channels AT5G55630 63.230 5.42e-140 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02628 K05389 - gmx:100777388 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02628 12 19387320 19389737 Bva12g02628 12 19387320 19389737 ECH