Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02623 ATGGCGGACTCAGACAACGACTCCGGCGGGGCGCAGAACACTGGAAACAATGGTCAGGGCAGCGAATCGTCGCCGCGAGAGCAGGACCGGTTTTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCTCTGCCAGCAAATGCGAAGATTTCAAAAGACGCGAAAGAGACAGTGCAGGAGTGCGTTTCCGAGTTCATTAGCTTCATCACAGGCGAGGCCTCCGACAAGTGCCAGAGGGAGAAGCGCAAGACCATCAATGGCGACGATTTACTTTGGGCTATGACCACCTTGGGATTCGAGGACTACGTGGAGCCTTTGAAGATTTACTTGCAGAGGTTTAGAGAAATAGAGGGAGAGAAGAGCGTGGCAGCACGTGACAGGGAAGTGGGTGTCGGCGGCAGCGGTGGCGTCGCTACAGGAAATAGTGGGTACGAGGGTGGTGCCGGCGGGGTGTACGGGGGAGCAGGAGGAGCTGGGATGGGAATGATGATTCATCAGGGACACGTGTACGGTTCATCTGGGCTACATCAGATGGCTGTGAGTGGTGGCAGTGGTTCTGTTATGGGTAAGAGTGGACCAAGTTATCCTGCTCCTGGGTCTAATGCGGGTAGACCCAGATA 623 0.5538 MADSDNDSGGAQNTGNNGQGSESSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREIEGEKSVAARDREVGVGGSGGVATGNSGYEGGAGGVYGGAGGAGMGMMIHQGHVYGSSGLHQMAVSGGSGSVMGKSGPSYPAPGSNAGRPR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02623 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Bva12g02623 207 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bva12g02623 207 MobiDBLite consensus disorder prediction 1 30 - -
Bva12g02623 207 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Bva12g02623 207 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Bva12g02623 207 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Bva12g02623 207 MobiDBLite consensus disorder prediction 1 26 - -
Bva12g02623 207 MobiDBLite consensus disorder prediction 182 207 - -
Bva12g02623 207 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 171 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva12g02623 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 171 - -
Bva12g02623 207 SUPERFAMILY Histone-fold 28 125 IPR009072 GO:0046982
Bva12g02623 207 Gene3D Histone, subunit A 19 132 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02623 Bva-Chr12 19366990 19368286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02623 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.800 1.11e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva12g02623 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02623 K08065 - jre:108985290 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02623 12 19366990 19368286 Bva12g02623 12 19366990 19368286 ECH