Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02621 ATGATGGATGAGGGTGAGGGAGGGTACGGTGAGAGTGGGGACCCGATGGATCAGTTCCATCGCAATGAAGCTATATCAGCTGTTGCGGATGAAGGTTTCTTGGGTGAGGAAGACGATGATTACGAGGATCTCTACAACGATGTTAATGTTGGGGAGGGGTTTCTTCAATCGTTGAGAAAGAACgaggatttagggtttaggaaTGATGATGCTGAGGAGAAAAAGACCCAGTCAACTGTTGTGCTTCCGGAAACCGGTGCTGGTGTTTCGATACCAGGTGTCGGTGGTGGTAGTGTTGACGCTGGGGGCGgcggtggtggtggaggagtTGGGACTAACGATGGAGCGTCCAGGGTTTCTGGGAGAGCAGATGGGTTTCAGAATCAGGGCTTTAGAGGGAATGAGATGGGTGTCAAGGGGAGCGGTGGATCAGGGCCTTCTATGGGCGGTGGAAGTGGGATTAAGGTTGAATTAGGACAACCATCAGGTAAATTGAATGAGATAGAGGAGCAAAGTGGTAATAATAGTGTAGGAGTGCAAGGGATGGGGCAGCAACCACATGGTGGGATTGTTGGGAATGTGGTGGGAAATGAGGGTTTGGTGAGACAAGGGGGAGGAGGAAATCTCAACAGGGTTGGAGGAAATGGGGTTGGGAATAGTGTCACTGGAGTGAATAATGTTGGTTCCGGAGGAGTTGTAGCTGGTGCGGGCGCTAGCAGTGCTGGTGGTACTGGCGCTGGAGGAACCATATTATTTGTGGGGGATCTGCACTGGTGGAGTACAGATGCTGAGCTGGAGGCAGAGCTTTGCAAGTATGGAGCAGTGAAGGAGGTGAAGTTTTTTGATGAGAAGGCTAGTGGGAAGTCAAAAGGGTATTGCCAGGTTGAATTTTATGACCCTTCTGCTGCCACTGCTTGTAAGGAAGGGATGAATGGGCATATGTTTAATGGGAGACCGTGTGTTGTTGCTTTTGCTTCGCCTTTTACTGTTAAGAGAATGGGAGAGGCTCAGGTGAGTAGGAATCAACAGATGACCCAATCTACAGCTACTCAGGGAAGAAGAGCACCGGTTGATGCTGGAGCTAAGACTGGTGGGAGCAATATTGCTACTGGTGGTAACTACCAAGGTGGAGATAACAACAGAGGTTTTGGCAGAGGTAACTGGGGCAGAGGGAATGCTCCTGGTATGGGAAATAGAGGGCCTGTTAATCCAATGAGGAACAGGGGTGGTGGCATGGGTGGTAGAGGAATTATGGGAAATGGGGGAAATGGGTTTGGACAGGGTATTGGTGGTACCCCGCCTCTGTTGCATCCTCAGTCAATGATGGGTCAGGGTTTTGATCCTGCATTTGGAGGTCCTATGGGAAGGATGGGAAACTATGGAGGCTTTCCTGGTGCTCCAACGCCTCCATTTTCTGGGATTTTGTCTTCGTTCCCTCCTGTTGGAGGTGTTGGTCTGCCTGGAGTGGCACCTCATGTCAATCCAGCCTTTTTTGGAAGAGGAATGCCTGTAAATGGCATGGGAATGATGCCCTCGTCAGGTGTTGATGGGCCTAATATGGGAATGTGGACAGATCCATCAATGGGTGGATGGGGTGGTGATGAACCTGGTGGTGGGAGAGCTGGAGAGTCTAGTTATGGGGAGGAAGCTGCATCAGATCATCACTATGGTGAAGTGAGTCATGATAGAGGTGGGTGGCCTAATGCACGGGAAAAAGATAGAGGATCAGAAAGGGACTGGTCTGGTTCTTCTGACCGAAGGTATAGGGATGATAGAGATCAAGGATATGAGAGAGATGCTCCGAGAGAAAAAGATACCCATGATCATGAATGGTCAGAAAGAAGACATCGTGATGATAGAGAAATAGGAAGCCGAGAGCGGGACAGGGAACGGGACCGTGATCGGGAACGATCTCGAGACCGTGACCGTGAAAGAGATCGTGATCGAGACCGTGAGCGTGACAGGTACAGGGAAGACCGGGACAGATATGCTGATCATCATAGGTACAGAGACCGTGAAGCTGACCATGAAGATGAATGGGAAAGGGGACGGTCATCAAAGAGCAAGTCCCGGTTATCCCATGAAGAGGAGCATCATTCTAGATCAAGAGATGCTGATTATGGGAAGAGGCGTCGGCTTACCTCAGAGTA 2150 0.493 MDEGEGGYGESGDPMDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNEDLGFRNDDAEEKKTQSTVVLPETGAGVSIPGVGGGSVDAGGGGGGGGVGTNDGASRVSGRADGFQNQGFRGNEMGVKGSGGSGPSMGGGSGIKVELGQPSGKLNEIEEQSGNNSVGVQGMGQQPHGGIVGNVVGNEGLVRQGGGGNLNRVGGNGVGNSVTGVNNVGSGGVVAGAGASSAGGTGAGGTILFVGDLHWWSTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPSAATACKEGMNGHMFNGRPCVVAFASPFTVKRMGEAQVSRNQQMTQSTATQGRRAPVDAGAKTGGSNIATGGNYQGGDNNRGFGRGNWGRGNAPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGGTPPLLHPQSMMGQGFDPAFGGPMGRMGNYGGFPGAPTPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPSSGVDGPNMGMWTDPSMGGWGGDEPGGGRAGESSYGEEAASDHHYGEVSHDRGGWPNAREKDRGSERDWSGSSDRRYRDDRDQGYERDAPREKDTHDHEWSERRHRDDREIGSRERDRERDRDRERSRDRDRERDRDRDRERDRYREDRDRYADHHRYRDREADHEDEWERGRSSKSKSRLSHEEEHHSRSRDADYGKRRRLTSE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02621 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 326 IPR000504 GO:0003723
Bva12g02621 715 MobiDBLite consensus disorder prediction 1 20 - -
Bva12g02621 715 MobiDBLite consensus disorder prediction 85 158 - -
Bva12g02621 715 CDD RRM_CFIm68_CFIm59 250 323 - -
Bva12g02621 715 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 714 IPR034772 -
Bva12g02621 715 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 714 - -
Bva12g02621 715 Gene3D - 242 362 IPR012677 -
Bva12g02621 715 SMART rrm1_1 249 322 IPR000504 GO:0003723
Bva12g02621 715 MobiDBLite consensus disorder prediction 515 715 - -
Bva12g02621 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 319 IPR000504 GO:0003723
Bva12g02621 715 MobiDBLite consensus disorder prediction 546 715 - -
Bva12g02621 715 MobiDBLite consensus disorder prediction 337 352 - -
Bva12g02621 715 MobiDBLite consensus disorder prediction 337 378 - -
Bva12g02621 715 SUPERFAMILY RNA-binding domain, RBD 245 340 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02621 Bva-Chr12 19362149 19366234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02621 227 324 Eukaryotic Initiation Factors Gene Family AT4G34110 32.000 1.52e-06 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02621 12 19362149 19366234 Bva12g02621 12 19362149 19366234 ECH