Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02592 ATGGCTTCATTTACTACAAATTCTGCAGTAGGAGAAGATAGAAATGCAAGTGCGTGGAACAGGTCTCCTcgtgtttcttcttcttcttcaccgCCTTCATTTTTGATTCGAATGGCCATGAGAATATCCAGAGCAAGATGGTTCATTTTCTTAAGAAGAGTATTCCATTACCAAAATGGCTCAAGGTCTGATCTTGGGTCCAATCCTTTCAATTCTGGCACTTGGATGACACTGGAGTTCATGGCTTTGATGGTTCAGATAACTATTATCACATTCACTTTGGCCATTTCTCAGAGGGAGAGACCCATTTGGCCTGTGAGGATATGGATTTCTGGTTACGAAATTGGCTGTATCCTTAATCTGCTGCTGCTTTATGGGCGCTACCGGCAACTTCATCTGACTCAAGGAGATGCTCTCAGCCTTTCTGATATGGAACAGCAGAGAGGCAATGAAGAAACAAGGAATTCTCATCTGATGAACAGATGCAGATCTTCATTGGAGCTTTTCTTCGCCATATGGTTTGTGATGGGTAATGTTTGGGTTTTCGACTCTCGTTTTGGATCTTTCCAGAGAGCTCCAAAACTCCATGTGCTATGCATCTCCTTGCTTGCTTGGAATGCAATCAGCTACTCTTTTCCCTTCCTACTGTTCCTGCTGCTATGCTGCTGCGTGCCACTTATGAGCAACGTCCTTGGATACAACATGAACATGGGCTCCTCTCAAAAAGGAGCATCTGAAGATCAAATTTCACAACTACCCAGTTGGAGATACAAACAAGTTCATAGCAAGATAGAGCATGGCAATGATTCTGAAAGCAGTGAGGGGCATATCAATGAAGACCCAGAATGCTGTATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTGAGACAATTGCCCTGTTCCCATATGTTTCACCTCAAGTGTGTAGATCAGTGGCTGAAAATTATATCATGCTGCCCTCTCTGCAAACAAGGACTAGAGAGATA 989 0.4206 MASFTTNSAVGEDRNASAWNRSPRVSSSSSPPSFLIRMAMRISRARWFIFLRRVFHYQNGSRSDLGSNPFNSGTWMTLEFMALMVQITIITFTLAISQRERPIWPVRIWISGYEIGCILNLLLLYGRYRQLHLTQGDALSLSDMEQQRGNEETRNSHLMNRCRSSLELFFAIWFVMGNVWVFDSRFGSFQRAPKLHVLCISLLAWNAISYSFPFLLFLLLCCCVPLMSNVLGYNMNMGSSQKGASEDQISQLPSWRYKQVHSKIEHGNDSESSEGHINEDPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKIISCCPLCKQGLER 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02592 329 CDD RING-H2_RNF111_like 281 324 - -
Bva12g02592 329 SMART ring_2 283 323 IPR001841 -
Bva12g02592 329 SUPERFAMILY RING/U-box 274 327 - -
Bva12g02592 329 Pfam RING-like zinc finger 282 310 IPR001841 -
Bva12g02592 329 ProSiteProfiles Zinc finger RING-type profile. 283 324 IPR001841 -
Bva12g02592 329 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 19 328 - -
Bva12g02592 329 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 328 - -
Bva12g02592 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 328 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02592 Bva-Chr12 19230726 19233512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02592 34 327 C3H Transcription Factor Family AT4G26580 71.284 1.84e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02592 - - gmx:100813670 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02592 12 19230726 19233512 Bva12g02592 12 19230726 19233512 ECH