Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02561 ATGGGTCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGGGGACAGTGGACTCCTGAGGAAGATAACAAGCTCTCATCCTACATTGCTCAACACGGGACCCGTAACTGGCGTCTCATCCCCAAGAATGCTGGCCTTCAGAGATGTGGTAAGAGTTGCAGGCTGAGGTGGACTAATTACCTTCGCCCTGACCTTAAACATGGTCAGTTCTCGGATGCAGAAGAGCAAACCATCGTGAAGCTTCATTCAGTTTTTGGTAACAGATGGTCACTGATAGCAGCTCAGCTGCCTGGCCGCACTGACAATGATGTAAAAAATCACTGGAACACCAAGCTGAAAAAGAAACTTTCAGGCATGGGCATCGACCCGGTCACCCACAAGCCATTCTCCCACCTGATGGCTGAAATTGCGACAACATTGGCACCACCCCAGGCGGCACATCTTGCTGAAGCAGCCCTTGGCTGCTTCAAAGACGAGGTGCTCCATCTTCTTACAAAGAAGCCCATGAACCACCAAGTCCAGCATTCCTCTGCTGCATGGGGGAATAATAACATCACTGCTTACATCAACTGTAAACCGGAAGAAAAAGACGACACTGTTGAGAAGATTAAGCTTGGCCTGTCAAAGGCTACACAAGAACCTGAAATGATACCTTCAAATAAACCTTGGGACCCCAATGGAATTATGTCTCCAAGTTTTGCAGGGACCTGCAGTGTTTTCCCTACAACGCCGGGGTTTCAATTCAGTCCAACATCTTTCGGCAACGAAGTGGATGGATCATCGTGGAGCCAAAGCATATGTACTGGGAGCACGTGCACAGGCATGGATCAGCAAGACCAGTCACATGGAAAGCTTGAGGACGAAAATGGAGATGAATATCAGGGCGCAAAAGAAATCAGAAATGGAACCAGCATCTTCAACTCAGACTGTGTCTTGTGGGATTTACTGTCACATGATCTAATTAACCCCATGGTATA 977 0.479 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPMNHQVQHSSAAWGNNNITAYINCKPEEKDDTVEKIKLGLSKATQEPEMIPSNKPWDPNGIMSPSFAGTCSVFPTTPGFQFSPTSFGNEVDGSSWSQSICTGSTCTGMDQQDQSHGKLEDENGDEYQGAKEIRNGTSIFNSDCVLWDLLSHDLINPMV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02561 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Bva12g02561 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bva12g02561 325 CDD SANT 70 112 IPR001005 -
Bva12g02561 325 CDD SANT 17 61 IPR001005 -
Bva12g02561 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva12g02561 325 Gene3D - 69 128 - -
Bva12g02561 325 Gene3D - 14 66 - -
Bva12g02561 325 PANTHER TRANSCRIPTION FACTOR MYB80 1 325 - -
Bva12g02561 325 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Bva12g02561 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva12g02561 325 PANTHER F14D16.11-RELATED 1 325 - -
Bva12g02561 325 SMART sant 13 63 IPR001005 -
Bva12g02561 325 SMART sant 66 114 IPR001005 -
Bva12g02561 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva12g02561 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02561 Bva-Chr12 19085806 19086986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02561 1 170 MYB Transcription Factor Family AT5G56110 90.588 1.21e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g02561 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02561 K09422 - gmx:100800764 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02561 12 19085806 19086986 Bva12g02561 12 19085806 19086986 ECH