Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02553 ATGGATCCTGGTCGCTATGGCCTACATCAAGGCTGGGATAATAACAGCGCTCTGGAGGGTTATGGTGCAGTACATGAGCCAAAATTCCGCCCTATTTTTGGCAGGGTTGGTGGTGCATATGATGAAAGAAGGTATATAGATGAAAGATATTCAAGGGACAGTGTCTACCAGAGGAATGCCTTCTCCCATGATGTTTTGGAGCGGGAGGCCTATCCACCACCAGGGCCTGCAGTTGGCCATTGGGGTCAATCCAAAAGAAGAGGTTATGATGAAGATTATCCACTGGACCGGGATTCTAGACGTCTTCAGAGGCCTTATTCATATCATCAGATTGAAGCTTTTAGAGATCGTGATATTGAAACATATGCAGAATTTGATAAGTTTCATGATGGCTATGCTGGCATTGAAAACTACGCTGATCGAGGATATGATAAACCTCCTAGGTTTGGGGGACATCACCGGGATGATTATGCATATGATGATTATGGCTATAGGTCGCACGTTTCCCATAATCATAGGGAGGACAGCCGTGAGAGGGATTACAATCATGATCGGCGCAGTTATGATTCTGATTATGAAAGAGGTAGAAGAGATAGTAATAAGAGGCGGCATGAATCCCATGATAGAGACTGCAATAAAAGATGTCTTAGTCGAGAAAAAGATCTGAGTCCACATAGGAGGCATGGGCGATCCCATTCCCGGTCACATTCCCAGTCCCTCTCCCATTCACATTCTCGGTCCCGTTCCCGATCTCATGGTTATGATGATCGTCCAAGATCAAGGTCCCCTCGAGGTCGAAGCCACGGCCAAAGTTACCGAGAAGACAGTTATGCTGACAGCCGAAATGAGAGAAGTGAAAAGCGCAGGGATCGTGAGGAGAAACATCAGCGGGAGCATTATTCTGTAGCCCCATCTGCTACTGTTGTTGTGAAGGGTCTTTCACAGAAGACAACCGAAGAAGATTTATACCAGATCCTTGCTGAATGGGGACCCCTTCGTCATGTTCGTGTTATAAAAGAGAGAACTTCTGGCATTTCTCGTGGATTTGCATTTATTGACTTTCCTTCTGTGGGAGCTGCACAAACAATGATGGACAAGCTTGGAGATGTTGGTCTTGTTATTGATGGTAGAAAGCTTTTCTTTGAATATAGTAGCAAGCCAACTGGAGGTCCAGGTGGTCCTTTTGGTCAGGAGGGAGCTATGAAGTCAGGCCATAATCATAAACACATTACTGTAACATCTGATTGGATGTGCACTATATGTGGCTACATAAATTTTGCACGGAGGACATCCTGCTACCAGTGTAATGAGCCACGAACTGAGGATGCTCCAGCAGCAGATATCACATTATCAAATCCAGCAGCCTTAGGAAAGAAAGGATTGGAAGCAGGTCCAACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAGCATGCTCCAATAAAGGATCTGCGTCTTGTGAGGGACAAATTTACTCATGTCTCAAGGGGTTTTGCATTTGTGCATTTTTATTCGGTGGAGGATGCCACTAGATCTCTTGAAGCAACAAATGGGACAACACTCGAGAAGAATGGGCAGATTCTGAGAGTAGCATATGCTAAAAGTATCTTGGGTCCTGGATCAGGAACAGCAGGACCCTCCCAATCAAACAGTTTTGCAGCTGCTGCTATTGAGGCTGCCACATTTGCTCAACAGTATGATGCTGTTGGATGGACTCCAAGAGAATACAATCCTGATGACAAACAATCTACTGGACATGTGCAAGCTGGCACAGAAATTGCAGTTCAGAAGGATGGCCAGGCTCCCCAATCTGGCTTTGTTTGGGATGACGCATCTGGTTATTATTATGACGCTGCTTCTGGATTTTACTATGATGGGAAAACTGGTCTTTATTATGACGGTAATAATGGGATTTGGTATTCATATGACCATCAAACTCAGCAATACATCCCTTACTCTGAACCTTCCAAAGCATCTGATGGTTCCAGCAGTAAAAAAGTGGTGATTTCTGCTCCAGCTACTACTGTTTCGTCAGTTGAGAGGCCAGCTTCATTGCCGGATGCAGTCCAGGCTGCTGCAACAGCTGCCTTAGctgcagaaaagaaagaaaaagaaaaatcaaaggagATAAAGCTTGCATCAAAAAGCAGCATTCTGgctaacaagaagaaaatgaataatgtCTTGTCAATGTGGAAACAGAGGAGTCATGAGGGGCAGGCTACTCGTGTGGCTTTGGAGGACAATCCGCCATCTGTCTCAGCTGATGATAAGTCCTATTCTTCCGGGAATTCCACTAAGAGTAAGTTCAGAACGGAGACTTCAGCTGCATGGGAGAATAATACAGGATCTTCAGCTGCAGCTGCTGGTACTTCAAGTTTGCCAACAACAAATTCAGATGCACTGACTGGTGCAGCTCCCTTTAGGACGGATGCCTCTGCGCTGGGTTCATATACATCACACGTGGCTGGTGGAAGGGGCAGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCAGAAGGAACAACCTCAAAATACCTACAGGGATCGTGCAGCTGAGAGGAGAAATTTGTATGGCTCATCATCTTCTGTTGGGGACGATTTGGCTGAACTTGGACCTGGGGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGTGTGGTTGGAGATTCCAACCTTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAGAACAATGTTGGCAACCGGATGCTCCGCAACATGGGATGGCAGGAAGGCTTGGGACTTGGGAAGGATGGAAGTGGAATGATAGAGCCTGTCCAGGCGCAAGCCATGGATAGTAGAGCAGGACTCGGGAGTCAACCGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGGGATACATACAAGACGCTCATTCATAAGAAAGCACTCGCTAGGTTTCGGGAAATGTCTTA 3029 0.4526 MDPGRYGLHQGWDNNSALEGYGAVHEPKFRPIFGRVGGAYDERRYIDERYSRDSVYQRNAFSHDVLEREAYPPPGPAVGHWGQSKRRGYDEDYPLDRDSRRLQRPYSYHQIEAFRDRDIETYAEFDKFHDGYAGIENYADRGYDKPPRFGGHHRDDYAYDDYGYRSHVSHNHREDSRERDYNHDRRSYDSDYERGRRDSNKRRHESHDRDCNKRCLSREKDLSPHRRHGRSHSRSHSQSLSHSHSRSRSRSHGYDDRPRSRSPRGRSHGQSYREDSYADSRNERSEKRRDREEKHQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERTSGISRGFAFIDFPSVGAAQTMMDKLGDVGLVIDGRKLFFEYSSKPTGGPGGPFGQEGAMKSGHNHKHITVTSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADITLSNPAALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATRSLEATNGTTLEKNGQILRVAYAKSILGPGSGTAGPSQSNSFAAAAIEAATFAQQYDAVGWTPREYNPDDKQSTGHVQAGTEIAVQKDGQAPQSGFVWDDASGYYYDAASGFYYDGKTGLYYDGNNGIWYSYDHQTQQYIPYSEPSKASDGSSSKKVVISAPATTVSSVERPASLPDAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLSMWKQRSHEGQATRVALEDNPPSVSADDKSYSSGNSTKSKFRTETSAAWENNTGSSAAAAGTSSLPTTNSDALTGAAPFRTDASALGSYTSHVAGGRGRRRFSEMPHSASTQKEQPQNTYRDRAAERRNLYGSSSSVGDDLAELGPGDSNRDFASRKGDPMPFPPGVGGGRVVGDSNLDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQPKKLDPSLEVQAGDTYKTLIHKKALARFREMS 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02553 1009 PANTHER FI21118P1 43 209 - -
Bva12g02553 1009 PANTHER FI21118P1 218 1008 - -
Bva12g02553 1009 SMART G-patch_5 931 977 IPR000467 GO:0003676
Bva12g02553 1009 MobiDBLite consensus disorder prediction 248 300 - -
Bva12g02553 1009 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 367 IPR000504 GO:0003723
Bva12g02553 1009 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 535 IPR000504 GO:0003723
Bva12g02553 1009 MobiDBLite consensus disorder prediction 168 226 - -
Bva12g02553 1009 MobiDBLite consensus disorder prediction 766 810 - -
Bva12g02553 1009 Pfam OCRE domain 615 665 IPR041591 -
Bva12g02553 1009 SMART zf_4 414 438 IPR001876 -
Bva12g02553 1009 PANTHER RNA-BINDING PROTEIN 43 209 - -
Bva12g02553 1009 PANTHER RNA-BINDING PROTEIN 218 1008 - -
Bva12g02553 1009 CDD RRM1_RRM2_RBM5_like 304 384 - -
Bva12g02553 1009 ProSitePatterns Zinc finger RanBP2-type signature. 416 435 IPR001876 -
Bva12g02553 1009 CDD OCRE_SUA_like 613 664 IPR035623 -
Bva12g02553 1009 MobiDBLite consensus disorder prediction 68 101 - -
Bva12g02553 1009 CDD RRM1_RRM2_RBM5_like 465 545 - -
Bva12g02553 1009 Pfam G-patch domain 934 975 IPR000467 GO:0003676
Bva12g02553 1009 SUPERFAMILY RNA-binding domain, RBD 237 384 IPR035979 GO:0003676
Bva12g02553 1009 MobiDBLite consensus disorder prediction 168 303 - -
Bva12g02553 1009 Gene3D - 412 437 - -
Bva12g02553 1009 MobiDBLite consensus disorder prediction 830 905 - -
Bva12g02553 1009 SUPERFAMILY RNA-binding domain, RBD 465 551 IPR035979 GO:0003676
Bva12g02553 1009 SMART rrm1_1 307 382 IPR000504 GO:0003723
Bva12g02553 1009 SMART rrm1_1 468 543 IPR000504 GO:0003723
Bva12g02553 1009 MobiDBLite consensus disorder prediction 84 101 - -
Bva12g02553 1009 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 547 IPR000504 GO:0003723
Bva12g02553 1009 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Bva12g02553 1009 Gene3D - 225 389 IPR012677 -
Bva12g02553 1009 Gene3D - 438 548 IPR012677 -
Bva12g02553 1009 ProSiteProfiles G-patch domain profile. 933 979 IPR000467 GO:0003676
Bva12g02553 1009 MobiDBLite consensus disorder prediction 751 810 - -
Bva12g02553 1009 MobiDBLite consensus disorder prediction 227 247 - -
Bva12g02553 1009 SUPERFAMILY Ran binding protein zinc finger-like 406 442 IPR036443 -
Bva12g02553 1009 ProSiteProfiles Zinc finger RanBP2 type profile. 412 441 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02553 Bva-Chr12 19019837 19028223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02553 305 531 Eukaryotic Initiation Factors Gene Family AT2G36660 24.514 2.25e-09 59.3