Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02552 ATGGGTTCTAAAATTTGTATGAACGAGGGGTGTGCGGCGGCCATCGCTGTCCACGATTGGAAGAAGGGGTGGCCTCTGCGATCCGGCGAATTTGCGCAACTATGTAACAGCTGcggATCTGCGTATGAGAATGCTGTTTTCTGTGATAAATTCCACCATGAAGACACTGGTTGGAGGGAATGCAAATTTTGCAACAAGTCTATCCACTGTGGATGCATAGCATCTGAGTCTTTGTTCGCGTGTCTTGATTTTGGCGGTATAAGTTGTGTTAGCTGTGTGAAGGCTTCTCAACTTTGTGTGATGCGGAATACTGGAAATCTGAATGGACCAGCAACGTCAACAAAAAGTAATGCAAGTGGTCAACATTCTGCTCGGATTGACAGTAGAAAGTTTATGGATAATGTCGATGAAGGAAAGCTTTTGCAATTGTGCAGAATTGTTGAAGCTAGTGAATCCAACCAGTGGCCTCAAGCTCAGATAGATGGGACAATTTCATCTCATGTGCCAACTAGCCAAGAAGTTAAGTGTCCACTCAGGGAAGTGGATGCAAGATTTCCAAATGTGCTAAGACCATCTGTTCAATTGATAACCTTTTccaatttagaaaataatagacCTCCATGGGAGATTAAAGATACGGATGTGTTACCTACACTTCCATCTTTGAGTATGTCCTTGGCAACCCCATCAGGAAATTCCATGCTGCCTTCTTCTATAGAGATAGTAGAAGCAAGGGATAAGGGTAAACCATCTCCTCTCGCTAATCAAGGTCAAAGATCTCGTCCTTTATTACCTAAACCATTGAAGGGTGGGCTTACCAAGAatattgaaacaaataaaggTCTGATTTCTCAGTCACGCATTGCCCGGCCACCAGCTGAAGGTAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAAGAATTACAGCAATTGTCTGGAGATTTAAAGTCCAAAGTAGTGCCGTTGTTTGAGAAGGTGTTGAGTGCCAGTGATGCTGGTCGAATTGGTCGTCTGGTTCTCCCAAAAGCATGTGCAGAAGCTTATTTCCCTCCTATTTCTCAATCAGAAGGTCTTCCTTTGCAAATTCAAGATGGGAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTCTTGGAGGGTGTGACCCCTTGCATACAATCCATGGAATTACAGGCTGGTGATACTGTAACATTCAGTCGGAAAGATCCTGGAGGCAAACTGGTTATGGGTTTCCGGAAGGCATCTAGTTCAGATACTCAGGATGCCTCCACATCTGCGCTTTCTAATGGAATTTCATCAAAGGAAACAGCCTTTTCTGGTGCAACTGAGAATCTACCCTCAGGAAGTAGTTATTCTGATCTTCTCCAACCAATGAAAGGGATGAAGGAACCTCACTTAAATGGCCCTTCAGCACCTTCGCATTTGGGTGGTGGGGATAATGTTTCAGAGAAGAAGAGGACTTGGAATATCGGGGCTAAAAGTAAGAGGTTGCTCATTCATAGTGAGGATGCTATGGAGTTGAGACTTACATGGGAGGAAGCACAGGACTTACTTCGTCCCCCGCCTAGTGTCAAGCCAAGCATTGTCGCAATTGAGGACCATGTATTTGAAGAATATGATGAACCACCtgtttttggaaaaagaaCAATATTCAGAGCCAATCCATCTGGGGGACAGGAGCAATGGGCTCAATGTGACAATTGCTCTAAATGGCGAAGACTACCAGTGGatgttcttcttcctcctaAGTGGACATGTCCTGAAAATGCCTGGGATGATAGCAGGTCTCTGTGTTCTGCACCAGAGGAACCAACGCCAAAGGAATTGGAAAATCTTCTGAGAACAAGCAAAGATTTTAAGAAGCGAAGAATTGCGGAAAGCAGTAAGTCACCCCAAGAACATGAGCCTTCTGGCTTAGATGCTCTTGCCAGTGCAGCAATTTTGGGAGATAGTCTTGTTGAGCCTGGCGAGTCATCAGGTGGAGCCACCACCCGACATCCTAGACACCGTCCTGGCTGCACTTGTATTGTGTGCATTCAGCCACCTAGTGGCAAGGGAAGACATAAACCTACGTGTACTTGCCAAGTGTGCCTGACTGTAAAGCGCCGCTTCAAAACCCTTATGCAGCGTAGGAAGAAACGCCAATCTGAACACGAAGCAGATGCTGCTGCCCAGAATGATCATATCAACCTCAGGGATGAATCAGAGACAAAGACCAGCCCAAGAGATAACTCAGAACCAGAGGGAATCCTAGAGAGAAACCAGCATGAACATGAGCCTCCTGAGCCTGAGCTGTGGGAGCGCAGTGTAGGAGAGATAGATCTGAACTGTGATCCCAGCCGCGAAGATATCAGTGTAGCAGGACCAAGCATGAATAATCATCTGGAAATGACAAGCTACCCATTACAGGATTTTATGAACCAAAATGGCCTAAGAAGCTTAAATATTGAAAAGCTGGCTTCTCCTCGTTCTTGTTTTCTGACTCAACGTACTGGAGAAACTCAGAGATACTTAGCTGATGAGGGACGCTTTGCATCTATAGcctgggaccaagaaagaagaGATACTGAACTCTACCCTACTCACAGTTCCAGGCAAACCAAACTTTCTTG 2657 0.44 MGSKICMNEGCAAAIAVHDWKKGWPLRSGEFAQLCNSCGSAYENAVFCDKFHHEDTGWRECKFCNKSIHCGCIASESLFACLDFGGISCVSCVKASQLCVMRNTGNLNGPATSTKSNASGQHSARIDSRKFMDNVDEGKLLQLCRIVEASESNQWPQAQIDGTISSHVPTSQEVKCPLREVDARFPNVLRPSVQLITFSNLENNRPPWEIKDTDVLPTLPSLSMSLATPSGNSMLPSSIEIVEARDKGKPSPLANQGQRSRPLLPKPLKGGLTKNIETNKGLISQSRIARPPAEGRGKNQLLPRYWPRITDQELQQLSGDLKSKVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLQIQDGKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMELQAGDTVTFSRKDPGGKLVMGFRKASSSDTQDASTSALSNGISSKETAFSGATENLPSGSSYSDLLQPMKGMKEPHLNGPSAPSHLGGGDNVSEKKRTWNIGAKSKRLLIHSEDAMELRLTWEEAQDLLRPPPSVKPSIVAIEDHVFEEYDEPPVFGKRTIFRANPSGGQEQWAQCDNCSKWRRLPVDVLLPPKWTCPENAWDDSRSLCSAPEEPTPKELENLLRTSKDFKKRRIAESSKSPQEHEPSGLDALASAAILGDSLVEPGESSGGATTRHPRHRPGCTCIVCIQPPSGKGRHKPTCTCQVCLTVKRRFKTLMQRRKKRQSEHEADAAAQNDHINLRDESETKTSPRDNSEPEGILERNQHEHEPPEPELWERSVGEIDLNCDPSREDISVAGPSMNNHLEMTSYPLQDFMNQNGLRSLNIEKLASPRSCFLTQRTGETQRYLADEGRFASIAWDQERRDTELYPTHSSRQTKLS 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02552 885 ProSiteProfiles Zinc finger CW-type profile. 571 621 IPR011124 GO:0008270
Bva12g02552 885 ProSiteProfiles B3 DNA-binding domain profile. 329 430 IPR003340 GO:0003677
Bva12g02552 885 Pfam B3 DNA binding domain 329 428 IPR003340 GO:0003677
Bva12g02552 885 MobiDBLite consensus disorder prediction 727 779 - -
Bva12g02552 885 MobiDBLite consensus disorder prediction 424 501 - -
Bva12g02552 885 CDD B3_DNA 327 428 IPR003340 GO:0003677
Bva12g02552 885 MobiDBLite consensus disorder prediction 246 274 - -
Bva12g02552 885 Pfam CW-type Zinc Finger 576 618 IPR011124 GO:0008270
Bva12g02552 885 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 832 - -
Bva12g02552 885 Gene3D - 307 433 IPR015300 -
Bva12g02552 885 SUPERFAMILY DNA-binding pseudobarrel domain 327 429 IPR015300 -
Bva12g02552 885 SMART B3_2 329 430 IPR003340 GO:0003677
Bva12g02552 885 MobiDBLite consensus disorder prediction 428 469 - -
Bva12g02552 885 MobiDBLite consensus disorder prediction 723 779 - -
Bva12g02552 885 Gene3D - 574 629 - -
Bva12g02552 885 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02552 Bva-Chr12 19011308 19019092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02552 4 836 B3 DNA Binding Superfamily AT4G32010 46.801 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva12g02552 B3 3.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02552 - - gmx:100789848 1116.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01196 12 11314680 11321658 Bva12g02552 12 19011308 19019092 BWGD
Bva12g02552 12 19011308 19019092 Bva12g02552 12 19011308 19019092 ECH