Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02550 ATGGATCTCCTCCTATTGGAGAAGACCCTCTTGGGTCTCTTCGTCGCTGTTGTCGTCGCCATTATCATATCAAAACTCCGAGGAAAGCGGTTCAAGCTCCCACCGGGCCCTCTGCCCGTACCCATATTCGGTAACTGGCTCCAAGTCGGTGATGATTTGAACCACCGGAACCTCACCGATTTAGCCAAGAAATTCGGCGACATATTCCTGCTCCGAATGGGCCAGCGCAATTTAGTGGTGGTTTCCTCGCCGGAGCTGGCCAAGGAGGTTTTGCATACGCAGGGTGTTGAATTCGGGTCCCGAACCCGGAATGTGGTGTTCGATATTTTCACGGGTAAGGGGCAGGATATGGTGTTCACGGTGTACGGTGAGCACTGGAGGAAGATGAGGAGAATAATGACGGTGCCGTTTTTCACTAACAAGGTGGTACAGCAGTACAGGCATGGGTGGGAAGACGAGGTACAACAAGTGGTGGAGGATGTGAAAAAGAATCCGGACTCAGCGACCAATGGAATCGTGCTACGTAGGCGGTTGCAGCTTATGATGTACAACAACATGTACAGGATTATGTTCGATAGAAGATTCGAGGGCGAGGAGGACCCTCTGTTTCAGAAGCTCAAGGTCTTGAACGGAGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTATAATTACGGTGATTTTATTCCCCTTTTGAGGCCATTCTTGAGAGGCTACTTGAAGATCTGCAAGGAAGTTAAAGAGAGAAGGTTGCAGCTATTCAAGGACTATTTCGTCGAGGAGAGgaaGAAGCTAACAAGCACCAAGAGTACAAGCAACGAAGGACTAAAATGCGCTGTCGACCACATCTTGGATGCCCAGAAAAAGGGAGAGATCAACGAGGATAATGTCCTTTACATTGTCGAGAACATCAATGTTGCTGCAATTGAGACAACCTTATGGTCAATCGAATGGGGTATTGCTGAACTTGTAAACCACCCTGAGATTCAGAGAAAGCTGCGCGAAGAAATCGACAGAGTCGTCGGAGTTGGAAACCCCGTGACGGAGCCAGACACCCAAAAGCTACCCTACCTCCAGGCAGTGATCAAGGAGACTCTCCGTCTGCGAATGGCGATCCCTCTGCTTGTCCCACACATGAACCTCCACGACGCCAAGCTCGGCGGCTACGACATTCCCGCCGAGAGCAAAATCCTCGTGAATGCGTGGTGGCTCGCCAACAACCCCGCCCACTGGAAGAAGCCGGAGGAGTTCCGGCCGGAGAGGTTCCTGGAGGAGGAGTGCAAGGTTGAGGCCAATGGGAATGACTTCAGGTACCTTCCCTTTGGCGTTGGCAGAAGGAGCTGCCCAGGAATCATCCTTGCATTGCCCATTCTTGGAATCACTTTGGGACGTTTGGTCCAGAACTTTGAACTGCTACCTCCTCCTGGGCAATCCAAGCTTGATACCACTGAGAAAGGTGGACAGTTCAGTTTGCACATTCTCAAGCACTCCACCATTGTTGCAAAGCCAAgatcatttta 1517 0.5056 MDLLLLEKTLLGLFVAVVVAIIISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEDEVQQVVEDVKKNPDSATNGIVLRRRLQLMMYNNMYRIMFDRRFEGEEDPLFQKLKVLNGERSRLAQSFEYNYGDFIPLLRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLTSTKSTSNEGLKCAVDHILDAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQRKLREEIDRVVGVGNPVTEPDTQKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEECKVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKLDTTEKGGQFSLHILKHSTIVAKPRSF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02550 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Bva12g02550 505 Gene3D Cytochrome P450 21 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Bva12g02550 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 SUPERFAMILY Cytochrome P450 34 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bva12g02550 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02550 Bva-Chr12 18993860 18997613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02550 1 504 Monolignol Biosynthesis Gene Families AT2G30490 84.722 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02550 K00487 - rcu:8282005 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01199 12 11329867 11333083 Bva12g02550 12 18993860 18997613 BWGD
Bva12g02550 12 18993860 18997613 Bva12g02550 12 18993860 18997613 ECH