Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02549 ATGTCGTATGTGCCTCCTCACCTCAGGAACTCGAGCTCAACCACTGTGGCTACCAGAACCTCATCTCTAACCCTGGAGAACGATCATCATAGCAAGCTCGCCTTCCCCTCAAACTCTCACTTGAAGAACTCTTCCACTGCCAATTCTCTCTGCACCTTTTCCAATGCCTCTCGCCGGAGTTCCGGTAATTTTACTCCGTCGAGGATTGCCGCTGTTCCAGACCCTGTTTTCCCTCAGTGGCAACCGTCCGAACGCGTTTCTCGCATGAAGCCGGAGCAGATAGAAGAAGTCCGTCTACGGCTTAATCTAGATGTTACTGTTGAATTGGACTCGCTTCCTGCACCTGCACCAATAGAATCTTTTATGGATatgTGTTTGCACCCTAGTATCATGAAGGATATTGCATATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCTATGCCAATTGCTCTTAGTGGAATGGATCTATTGGGCTGTGCAGAAACTGGTAGTGGAAAAACTGCAGCCTTCTCCATTCCTATGATACAGCATTGCTTGGCTCAACCTCAAATACGACGTGGTGATGGTCCTCTAGCATTGGTTTTGGCTCCTACTAGAGAGCTTGCtcaacaaatagaaaaagaggTTAAAGCATTTAGTAGATCACTTGATTCATTAAAAACTGCTATAGTTGTTGGTGGAACTAACATCAGTGAACAGAGGTCTGAGCTACGGGCAGGAGTTGACATAGTGGTTGCAACCCCCGGAAGATTTATTGATCACTTACAACAAGGCAACACATCCCTTTCTAGAATTTCATTTGTTGTTCTAGATGAGGCTGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACATTGCTATTTAGTGCAACTATGCCTGTAGAGATTGAAGCATTAGCAAAGgAGTACTTATCTAACCCGGTGCAAGTAAAGGTGGGAAAAGTGAGTAGCCCAACAGCAAATGTTTCTCAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCGGCTTCTTGGTTTGCTTGTGGAGGAGGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTTGTGGAGAGAAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTAGCACAAGGGTTGTCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAGAGTGAAAGGGAGGCTGCTTTGCATGATTTTCGGAGTGGTTCTACTTGCATTTTGGTTGCTACCGATGTTGCATCAAGGGGCCTGGACGTCACAGGAGTGTCACATGTTATAAACCTCGATCTTCCCAAGACCATGGAAGATTATGTACACCGGATTGGGAGGACAGGGCGTGCTGGATCAACAGGACAagctatttctttttacactgATCGTGATATGTTTCTTGTGGCAAATATAAAGAAAGCGATAGCTGATGCTGAATCTGGGAATGCTGTAGCATTTGCAACAGGAAAgATTGCTAGAAGGAAGGAGAAAGAAGCTGCAGCGGCGCAAAAGGAGGCAAAGAATGTTTTATCCAAGCACTTAGGATTGGGAGGTGCTTCTATCAACATTGAGGATAAGTATAAGTTCATGATTACCGCCTCAGGCACTAAAAGAGAAGGTGCAGCAGATAGTGCTTGGGATGATTA 1694 0.4386 MSYVPPHLRNSSSTTVATRTSSLTLENDHHSKLAFPSNSHLKNSSTANSLCTFSNASRRSSGNFTPSRIAAVPDPVFPQWQPSERVSRMKPEQIEEVRLRLNLDVTVELDSLPAPAPIESFMDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGMDLLGCAETGSGKTAAFSIPMIQHCLAQPQIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSLKTAIVVGGTNISEQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLSNPVQVKVGKVSSPTANVSQTLVKVSENEKIDRLLGLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTCILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQAISFYTDRDMFLVANIKKAIADAESGNAVAFATGKIARRKEKEAAAAQKEAKNVLSKHLGLGGASINIEDKYKFMITASGTKREGAADSAWDD 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02549 564 CDD DEADc 130 327 - -
Bva12g02549 564 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Bva12g02549 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 508 IPR001650 -
Bva12g02549 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Bva12g02549 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 326 IPR014001 -
Bva12g02549 564 Pfam Helicase conserved C-terminal domain 369 467 IPR001650 -
Bva12g02549 564 Coils Coil 508 528 - -
Bva12g02549 564 Gene3D - 332 527 IPR027417 -
Bva12g02549 564 SMART ultradead3 138 341 IPR014001 -
Bva12g02549 564 MobiDBLite consensus disorder prediction 1 24 - -
Bva12g02549 564 Gene3D - 79 330 IPR027417 -
Bva12g02549 564 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 18 529 - -
Bva12g02549 564 SMART helicmild6 386 467 IPR001650 -
Bva12g02549 564 CDD SF2_C_DEAD 338 476 - -
Bva12g02549 564 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 18 529 - -
Bva12g02549 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 486 IPR027417 -
Bva12g02549 564 Coils Coil 205 225 - -
Bva12g02549 564 Pfam DEAD/DEAH box helicase 143 313 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02549 Bva-Chr12 18979392 18987098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02549 119 489 Eukaryotic Initiation Factors Gene Family AT1G72730 36.364 1.20e-71 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02549 K12823 - gmx:100787545 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02549 12 18979392 18987098 Bva12g02549 12 18979392 18987098 ECH