Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02545 ATGTCCATACTATCCTCTGCGATGCTCCAGAAGAGGAAACCCGACTCCCCAAGTACCCTTTCTGAGGACGTGAGTTCTTACAGTAACCCACCATGTAAAACTAGGAGAAAATCTCACCAAAAGCTAGTAAGGATCATACTCACTGACCATGATGCTACTGATACGGACTCTTCCAGCGATGAAGAGCAAGAAAACCCAGTGAGATTCCCCAGAGTTAAGAGGCAAATTACCCGGATCAGCATGGAAGTCTCTTTCTCAGATTCCCCTTCTCCCTCTTGTTCCTCTCTCTCCTCTGCTAAGCAGGACCAGACCCATGTTAGGAGACCCAAGAAATCTCTCAATTGTAACATCTCCTCTCGGTGCCACAACAAGTTCAGGGGCGTTCGCCAGCGGCCGTGGGGAAAATGGGCCGCCGAGATCCGGGACCCGATCCGACGAAAACGGGTCTGGCTGGGAACATTCGACACGGCGGAGGAAGCTGCCACCGTGTACGATAAGGCTGCGCTGAAGTTGAAGGGTCCTAACGCCGTTACCAACTTCCCCAGCACCATGATGACGAAGGTGGAAACGGAAACGCCGGTGGCCGTTAGCAGTCCAAGCTCCGACGGCGTCATCTCCTCCGACACGATTGCCTCACCCACGTCCGTCCTGCCTTACGACGGAGAATCAACACCCTTCGACGGTTTCAGTTACGGCGACGTCGATGCCTTCGGTTTCGATATTGACGTGCCGTTCAGCGTGCCAGACATGGATATGATGCTGTCTAGTCAGCAGTTCGGAAAGGAAGAGTTCGGCGAGTTTGACATCGACGATTTCTTCTCGCGGCCCAACTG 833 0.5342 MSILSSAMLQKRKPDSPSTLSEDVSSYSNPPCKTRRKSHQKLVRIILTDHDATDTDSSSDEEQENPVRFPRVKRQITRISMEVSFSDSPSPSCSSLSSAKQDQTHVRRPKKSLNCNISSRCHNKFRGVRQRPWGKWAAEIRDPIRRKRVWLGTFDTAEEAATVYDKAALKLKGPNAVTNFPSTMMTKVETETPVAVSSPSSDGVISSDTIASPTSVLPYDGESTPFDGFSYGDVDAFGFDIDVPFSVPDMDMMLSSQQFGKEEFGEFDIDDFFSRPN 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02545 277 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Bva12g02545 277 PIRSF PTI6 15 277 IPR017392 GO:0003700
Bva12g02545 277 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Bva12g02545 277 MobiDBLite consensus disorder prediction 79 102 - -
Bva12g02545 277 MobiDBLite consensus disorder prediction 1 111 - -
Bva12g02545 277 CDD AP2 124 181 IPR001471 GO:0003700|GO:0006355
Bva12g02545 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 272 - -
Bva12g02545 277 MobiDBLite consensus disorder prediction 1 33 - -
Bva12g02545 277 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 33 272 - -
Bva12g02545 277 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Bva12g02545 277 SUPERFAMILY DNA-binding domain 124 182 IPR016177 GO:0003677
Bva12g02545 277 Gene3D AP2/ERF domain 123 183 IPR036955 GO:0003700|GO:0006355
Bva12g02545 277 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Bva12g02545 277 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02545 Bva-Chr12 18954355 18956009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02545 33 219 AP2-EREBP Transcription Factor Family AT4G27950 45.026 2.53e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva12g02545 AP2 4.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02545 K13434 - gmx:100794593 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01206 12 11373358 11375332 Bva12g02545 12 18954355 18956009 BWGD
Bva12g02545 12 18954355 18956009 Bva12g02545 12 18954355 18956009 ECH