Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02541 ATGAAGGTCGGTGGCtactttgaattttgttgTCAGTTTCTTATATCTTACACCAAACAAGTCTCCATGAAGCTCTGTTCCAATTCAATGCATCCTTtcctttttgccttttttattcttttccctCTGGCTATTGCTGATCTAAATTCAGATAAGCAAGCACTTCTTGACTTTGCTACTGCTGTTCCCCATCGTAAGAACTTTATGTGGAATCCAAACACCTCAGTCTGCTCATCTTGGATAGGCGTCACTTGCAGTGCAGATGGCACTCGTGTTGTATCTGTCCGGCTCCCGGGTGCTGGACTAGTGGGCTCCATCCCAGTCAATACGCTTGGCAAGCTTGATGCCCTCAGAACCATCAGCCTTAGATCCAACCGACTCAGTGGTATTCTACCTAATGATATTACTTCTCTTCCTGCACTTGAGCGTCTCTACCTCCAACATAATAACCTTAGTGGTGATATACCTGCCTTATTGTCACCCCAATTCATTGTACTCGATTTGTCATTTAATTCCTTCACTGGTGTCATTCCAAAGTCTATAGAAAATTTAACAGAACTAACTAGATTGAGCCTCCAGAACAACTCCCTATCTGGAGAAATACCTAATCTCAGTGTCACTAATCTCAAGGATTTGAATTTAAGCTACAACCATCTCAATGGCTCTATCCCAGCAGCCCTTCAGAAGTTTCCCAATTCATCCTTTGAGGGGAACTCTCTCTTATGTGGGCCACCTCTAAAGCCATGCTCTCCAATCCCCCCTAtaccttctccttctccttcctTTGCCCCGCCCTCACATCCGATAAGACAAAGctccaaaaagaaattgagcaTGGGAACTATCATTGCAATTGCTGTTGGAGGAGCTGTGCTGTTGTTTTTTGTAGCCCTTGTGATTGTTCTTTGTtgtttaaagaagaaagatggcAGAGGCTCTGGTGTAGCTAAAGGGAAGGGCCCTAGTGGTGGAAGGGGTGAGAAGCCAAAAGAAGAGTTTGGTAGTGGCGTGCAAGAACCAGAGAAAAACAAACTAGTTTTCTTTGAAGGCtgttcttataattttgatcTTGAGGATTTGCTGAGAGCTTCAGCAGAAGTTCTGGGAAAAGGTAGTTATGGTACTGCATATAAGGCTGTATTGGAGGAGTCAACCACAGTGGTTGTGAAAAGGTTGAAAGAAGTAGTTGTAGGAAAGAGGGATTTTGAACAGCAGATGGAGATTGTGGGAAGGGTTGGGCAGCACCCAAATGTTGTGCCACTTCGagcttattattattcaaaggATGAAAAGCTTCTGGTTTATGACTACATCCCGGGTGGCAATCTATCCACTCTCTTGCATGGTAATAGAGCAAGTGGAAGAACCCCATTAGATTGGGACACCCGAATCAAAATCTCCCTTGGAATTGTCAGAGGAGTTGCTCATATACATTCTGTTGGTGGTCCAAAATTTGCACATGGAAATATAAAGTCCTCAAATGTCCTCCTAAACCAAGACAATGATGGCTGCATTTCTGATTTTGGCTTAACCCCGCTCACGAATGTCCCTGCAACCCCATCTAGAGCTGCAGGTTACCGTGCTCCTGAGGTGATTGAAACCCGTAAACACACTCATAAATCAGATGTATACAGCTTTGGCGTCCTCCTTTTGGAAATGCTTACTGGGAAAGCTCCACTCCAGTCACCTGGCCGCGATGATATGGTTGATCTCCCAAGGTGGGTTCAGTCTGTTGTTAGAGAAGAATGGACAGCTGAGGTTTTTGATGTGGAGCTAATGAGGTACcaaaatattgaagaagaaatggtGCAAATGTTGCAAATTGCCATGGCTTGTGTTGCGAAGGTACCAGATATGCGGCCTAACATGGATGAAGTGGTGAGAATGATTGAAGAGATCCGGCAATCTGACTCAGAGAACCGGCCATCTtctgaagaaaacaaatccaAGGACTCAAATGTCCATACTCCATA 1973 0.4105 MKVGGYFEFCCQFLISYTKQVSMKLCSNSMHPFLFAFFILFPLAIADLNSDKQALLDFATAVPHRKNFMWNPNTSVCSSWIGVTCSADGTRVVSVRLPGAGLVGSIPVNTLGKLDALRTISLRSNRLSGILPNDITSLPALERLYLQHNNLSGDIPALLSPQFIVLDLSFNSFTGVIPKSIENLTELTRLSLQNNSLSGEIPNLSVTNLKDLNLSYNHLNGSIPAALQKFPNSSFEGNSLLCGPPLKPCSPIPPIPSPSPSFAPPSHPIRQSSKKKLSMGTIIAIAVGGAVLLFFVALVIVLCCLKKKDGRGSGVAKGKGPSGGRGEKPKEEFGSGVQEPEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVGKRDFEQQMEIVGRVGQHPNVVPLRAYYYSKDEKLLVYDYIPGGNLSTLLHGNRASGRTPLDWDTRIKISLGIVRGVAHIHSVGGPKFAHGNIKSSNVLLNQDNDGCISDFGLTPLTNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVHTP 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02541 657 CDD STKc_IRAK 368 633 - -
Bva12g02541 657 Pfam Leucine Rich Repeat 165 184 IPR001611 GO:0005515
Bva12g02541 657 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515
Bva12g02541 657 ProSitePatterns Protein kinases ATP-binding region signature. 368 399 IPR017441 GO:0005524
Bva12g02541 657 SUPERFAMILY L domain-like 54 249 - -
Bva12g02541 657 MobiDBLite consensus disorder prediction 632 657 - -
Bva12g02541 657 PANTHER LRR RECEPTOR-LIKE KINASE 15 657 - -
Bva12g02541 657 MobiDBLite consensus disorder prediction 310 337 - -
Bva12g02541 657 Gene3D Ribonuclease Inhibitor 48 204 IPR032675 -
Bva12g02541 657 Pfam Leucine rich repeat 104 151 IPR001611 GO:0005515
Bva12g02541 657 PANTHER OS05G0588300 PROTEIN 15 657 - -
Bva12g02541 657 Gene3D Transferase(Phosphotransferase) domain 1 438 656 - -
Bva12g02541 657 SUPERFAMILY Protein kinase-like (PK-like) 366 640 IPR011009 -
Bva12g02541 657 MobiDBLite consensus disorder prediction 253 272 - -
Bva12g02541 657 Gene3D Ribonuclease Inhibitor 205 249 IPR032675 -
Bva12g02541 657 ProSiteProfiles Protein kinase domain profile. 362 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02541 657 MobiDBLite consensus disorder prediction 323 337 - -
Bva12g02541 657 Pfam Protein kinase domain 365 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02541 657 Gene3D Phosphorylase Kinase; domain 1 331 437 - -
Bva12g02541 657 Pfam Leucine rich repeat N-terminal domain 49 86 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02541 Bva-Chr12 18942744 18947416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02541 7 655 Receptor kinase-like Gene Family AT5G58300 66.921 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Bva12g02541 Pkinase 8.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02541 - - gmx:100796171 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02541 12 18942744 18947416 Bva12g02541 12 18942744 18947416 ECH