Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02538 ATGGCAAAGGGTCGCAATGCAAACACATATGAAGAGGCTCGCAAGCAAAGactagaagaaaacaaaaagagatttgagGATTTAGGAATTTCAAAGATTTCAAAAGGTTTGACTGAAGCTACAAGTCCCGTGAAGAAAACTGTGCAACATCTTCGAAAAGTGAAGTCGAAGAGCAATGATGTAATGGAACTAAGACGCTCTTCTCGCACACGAAATCCAGTTTCATATCATGAAAACGTTGGAATAGACCTTCCACGTTTTCGGAAGAGGTCAAGATCATCATCATGGGGAAGTTATGTTGCGAGGCCGTTGGATGAACTCAAAGAAGCTACAGATGAAGAAAGAAGTCGGGCTCTTGAGGCTGCAGAGGCTCTCCAAAGCAATTTGCAGAGTGGAAATCCATCGTTTATAAAGTCAATGGTCCGTTCTCATGTTTATAGCTGCTTTTGGTTGGGCCTTCCTACTAAATTTTGTGAGGATCATCTTCCAAAAAGAGTGTGTGACATGGTTTTGGAGGACGAAGATGGCTCTGAATATCAGGCTGTTTTCATTGGCAACAGAACTGGGCTCAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAGTTGGACGATGGTGATGCACTTGTTTTTGAATTGATTGAACCAACAAGATTCAAGATTTATATTGTTAAGGCATTGCCAGATTCAACTGAAGACGGGAAAGAAATATCTGAGGAAGAAGTTGAAATGTGTGAAGCCAAGAAGAACGAATCGCAAGCAAAGAAGACAGGAAGGCGGAAACATGTCAGAGATTATGTGCATGAAGCTAGTGAGCCTGAAGATTCTCAGGAGCATCTCACTGAAagtaataatacaaaaaatgaaGTCAAAACACAAGAGGAAAACCCAGCTAAGAAGACTTCTCGGCAGAAATCGCAAAAGAAATGTAAACCCCTTGATGCCTGTGAGCCAAAAAGGGAAGAACAAAGTGAAGAAGGAAATGTTCAAACAAGAAGGATGAGAAGGAATTCGAAACGAGGTAAAATTGATGACTCGGGAAGTCCACAGCAGCTGCCTCTGCGAGAAAATAACATTGATAGCGAAGTCAAACCAGAAAGGACCAGCCCAGATAAGAACAATGGATTTCTTCAGCACACTGATGACGAGTTAAAGAAGGTTGAATTGGTTGAAGATGCAGATAAATGTACTTCAAAGAAGCCTAGAAAGAGATCTGCCCCAAAGTTTTTCAGAAAGAAAGCGTA 1244 0.4051 MAKGRNANTYEEARKQRLEENKKRFEDLGISKISKGLTEATSPVKKTVQHLRKVKSKSNDVMELRRSSRTRNPVSYHENVGIDLPRFRKRSRSSSWGSYVARPLDELKEATDEERSRALEAAEALQSNLQSGNPSFIKSMVRSHVYSCFWLGLPTKFCEDHLPKRVCDMVLEDEDGSEYQAVFIGNRTGLSGGWRAFALEHKLDDGDALVFELIEPTRFKIYIVKALPDSTEDGKEISEEEVEMCEAKKNESQAKKTGRRKHVRDYVHEASEPEDSQEHLTESNNTKNEVKTQEENPAKKTSRQKSQKKCKPLDACEPKREEQSEEGNVQTRRMRRNSKRGKIDDSGSPQQLPLRENNIDSEVKPERTSPDKNNGFLQHTDDELKKVELVEDADKCTSKKPRKRSAPKFFRKKA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02538 414 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 239 IPR044837 -
Bva12g02538 414 SUPERFAMILY DNA-binding pseudobarrel domain 130 224 IPR015300 -
Bva12g02538 414 Coils Coil 235 255 - -
Bva12g02538 414 Pfam B3 DNA binding domain 136 222 IPR003340 GO:0003677
Bva12g02538 414 Coils Coil 8 28 - -
Bva12g02538 414 MobiDBLite consensus disorder prediction 268 381 - -
Bva12g02538 414 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 5 239 - -
Bva12g02538 414 MobiDBLite consensus disorder prediction 53 71 - -
Bva12g02538 414 SMART B3_2 136 227 IPR003340 GO:0003677
Bva12g02538 414 Coils Coil 108 128 - -
Bva12g02538 414 ProSiteProfiles B3 DNA-binding domain profile. 136 227 IPR003340 GO:0003677
Bva12g02538 414 MobiDBLite consensus disorder prediction 38 71 - -
Bva12g02538 414 Gene3D - 110 227 IPR015300 -
Bva12g02538 414 MobiDBLite consensus disorder prediction 394 414 - -
Bva12g02538 414 MobiDBLite consensus disorder prediction 268 343 - -
Bva12g02538 414 CDD B3_DNA 134 225 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02538 Bva-Chr12 18922990 18925721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02538 7 226 B3 DNA Binding Superfamily AT5G58280 49.801 9.32e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva12g02538 B3 2.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02538 - - lang:109355714 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02538 12 18922990 18925721 Bva12g02538 12 18922990 18925721 ECH