Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02531 ATGCTTGCTGCAGCTGCGTCTGCTTCCAGACGCATTAGAGCTCCAGAGCTTCTTCAATGCGATGGTAGACGCAGGATAGTGCCACAGTGTGCCATTGCCGTTAGCTGCTTTCGCCCTTCTACTTGTGTTGATCCGAGTAGGAACAACTGGAGTAGCACTCGAGTTCGATTACTTTTCAGTGTCTCTGGCACCGGTCCCTGTTCAACTCGCAGTAGAACAAGTAGAGATTACGCTTATGCCTTCACTTTCAATACGGATGATCCCAGAAGATACCGGAGGTGGCAAACTAATATAAAGGGGTTTCTCTCTGATTCATCATCTTCCGCTCCTTCGCTTTATGGCAGATTAAATAGGCCATCCTTACCCCAACCCAGTTCGACGCTAGATGGGCAAGCTTTATTCTCAACTTCAACTAAAACTGATGATGGAACGGCCTCAACGCAGCATGAGACCAAGAACCCAAAGCCTACTACCACCATTGTTAAAGCACCTGCTGGGGAACAAGTTGCTGACACGAAAATCCTTCGTACACTTGCTAGTTATTTGTGGATGAAAGATAATTTTGAGTTTCGATTCCGTGTTATTGCTGCATTGGGTTTTCTTGTTGGGGCTAAGGTTCTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTGACGACTGCCACAGGCAATGCCAGTGCTCTTGCTTCTTTTAATGCTGCAAATTCAACTCTATTGGCTCTTTTTGCAACCCCAGCGGCTGTATTGATTGGATATGGGATTGCACGTTCAGGAGCTGCTGCCTTCAATGAACTTCGAACTGCTGTATTCTCAAAGGTAGCACTGCGAACAATCCGATTGGTGTCTAGGAAGGTTTTTTCACATTTGCATGACCTTGACCTTCGGTATCATCTAAGTCGAGAAACAGGTGctttaaatagaataattgaTCGTGGTAGCCGtgcaataaattttattctctcaTCCATGGTGTTCAATGTTGTACCCACCATATTAGAGATATCTATGGTATCAGGTATACTGGCATACAAATTTGGAGCACCTTTTGCATGGATCACATCCTTATCAGTTGCTGCTTATGTCATTTTTACACTGACTGTGACACAGTGGAGGACTAAGTTCAGGAAGGCCATGAATAAAGCAGATAATGATGCAAGTAATAGGGCGATTGATtctcttattaattatgagactgtcaaatattttaataatgaagGTTTTGAAGCTGAAAAATATGACGAGTATCTAAAGAAGTATGAAGATGCTGCTTTAAAAACACAACGCAGTCTTGCATTCCTGAACTTtggtcaaaatattatttttagcaCAGCTCTTTCCACAGCAATGGTGCTGTGTTCGCATGGGATCATGAATGGCAATATGACTGTTGGTGATTTGGTGATGGTAAATGGGCTTCTCTTCCAATTATCGCTTCCGCTCAATTTCCTGGGTAGTGTTTATCGTGAGACTATACAGAGTCTAGTAGACATGAAGTCCATGTTTCAGTTACTGGAGGAAAGAGCAGATGTTAGGGATAAGGACAATGCAAAGCCTCTAAGTTTAAACAGAGGGAGCATTCAGTTTGAAGATGTACACTTCAGTTACCTTCCAGAAAGAAAGATCCTTGATGGAATATCTCTTGTTGTACCTGCTGGAAAAAGTGTGGCAATTGTTGGCACCAGCGGAAGTGGAAAGTCAACCATTCTTAGAATGATCTTCCGGTTTTTTGATCCTCATTCTGGAAGTATAAAGATAGATGGTCAAGATATTCGGGATGTAACTCTTGAGAGTTTGCGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACGATATTTCACAATATTCACTATGGCCGACTTTCAGCTACTGAAGAGGAGGTCTATGAAGCTGCTCGGCAAGCAGCAATTCATGACACTATAATGAATTTCCCTGAGAAATATTCAACTGTTGTGGGAGAACGAGGGCTCAAGTTAAGTGGTGGCGAGAAGCAACGTGTTGCCCTTGCTCGTGCATTCTTAAAAGCGCCTGCAATTATGTTGTGCGATGAAGCTACAAGTGCACTTGATAGCACAACAGAAGCAGAGATTTTAAGTGCATTAATGTCTTTAGCGAATAATCGAACTTCCATATTTATTGCTCACAGGCTTACCACTGCAATGCAATGTGACGAGATTGTAGTGTTGGAAAATGGAAATGTGATTGAACAAGGACCCCATGAAGTGCTCTTATCAAAGGCAGGAAGATATGCCCAGCTTTGGGCTCAACAAAATAACACAGTTGATTCAATTGATGCAGCCATTAAAACAGGGACATG 2342 0.4129 MLAAAASASRRIRAPELLQCDGRRRIVPQCAIAVSCFRPSTCVDPSRNNWSSTRVRLLFSVSGTGPCSTRSRTSRDYAYAFTFNTDDPRRYRRWQTNIKGFLSDSSSSAPSLYGRLNRPSLPQPSSTLDGQALFSTSTKTDDGTASTQHETKNPKPTTTIVKAPAGEQVADTKILRTLASYLWMKDNFEFRFRVIAALGFLVGAKVLNVQVPFLFKLAVDWLTTATGNASALASFNAANSTLLALFATPAAVLIGYGIARSGAAAFNELRTAVFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVAAYVIFTLTVTQWRTKFRKAMNKADNDASNRAIDSLINYETVKYFNNEGFEAEKYDEYLKKYEDAALKTQRSLAFLNFGQNIIFSTALSTAMVLCSHGIMNGNMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADVRDKDNAKPLSLNRGSIQFEDVHFSYLPERKILDGISLVVPAGKSVAIVGTSGSGKSTILRMIFRFFDPHSGSIKIDGQDIRDVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATEEEVYEAARQAAIHDTIMNFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAIMLCDEATSALDSTTEAEILSALMSLANNRTSIFIAHRLTTAMQCDEIVVLENGNVIEQGPHEVLLSKAGRYAQLWAQQNNTVDSIDAAIKTGT 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02531 780 Gene3D - 521 776 IPR027417 -
Bva12g02531 780 ProSitePatterns ABC transporters family signature. 667 681 IPR017871 GO:0005524
Bva12g02531 780 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 530 764 IPR003439 GO:0005524
Bva12g02531 780 PANTHER ABC TRANSPORTER OF THE MITOCHONDRION 1-RELATED 137 771 - -
Bva12g02531 780 SUPERFAMILY ABC transporter transmembrane region 189 509 IPR036640 GO:0005524|GO:0016021
Bva12g02531 780 MobiDBLite consensus disorder prediction 105 159 - -
Bva12g02531 780 CDD ABC_6TM_ATM1_ABCB7 197 504 - -
Bva12g02531 780 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 137 771 IPR039421 -
Bva12g02531 780 Gene3D ABC transporter type 1, transmembrane domain 181 520 IPR036640 GO:0005524|GO:0016021
Bva12g02531 780 CDD ABCC_ATM1_transporter 530 765 - -
Bva12g02531 780 Pfam ABC transporter 546 695 IPR003439 GO:0005524
Bva12g02531 780 MobiDBLite consensus disorder prediction 105 158 - -
Bva12g02531 780 Pfam ABC transporter transmembrane region 195 483 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g02531 780 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 195 496 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g02531 780 SMART AAA_5 555 741 IPR003593 -
Bva12g02531 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 765 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02531 Bva-Chr12 18871610 18882730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02531 376 768 Calmodulin-binding Proteins AT2G36910 36.855 1.82e-65 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02531 K05662 - gmx:100787870 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02531 12 18871610 18882730 Bva12g02531 12 18871610 18882730 ECH