Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02525 ATGGCTGCGGAAGTGGAGCATTTTACTTTTGGGCCTTACAAAATACACAAGAGTCAAGTGTTCTACACCTCCCAGCTTTCTTATGCCATGGTCAATCTGCGTCCTCTTCTTCCGGTGTCTCTTCTCTCCTTTCACCTCGAGACGGTGACTATGGAGTTCGTTCTTAAGAAATACTTTGGGTTTTCTGCATTTCGGCCATATCAGGAGGAGGTTATCCAGAACATTATTGACAAAAGGGACTGCTTAGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTATGCTATCAGGTACCTCCTTTGGTTGTAAGAAAGACTGGGATTGTAGTGAGCCCGCTTATATCGTTAATGCAAGATCAGGTAATGGCTTTGAAAGAAAGGGGTATCAGAGCTGAGTATCTTGGAAGTGCTCAGACGGATAGAACAATCCAGACCAAAGCTGAGAGTGGTCAATTTGATATTCTGTTCATGACCCCTGAGAAGGCTTGCTTGATTCCTACCAGCTTCTGGTCCAACTTGCTCAAGGTGGGAATCTGTCTTTTTGCTGTTGATGAAGCACATTGCATATCAGAGTGGGGCCATGATTTCAGGGTGGAATACAAGAAGCTGGACAAGTTACGTGGTGTTCTAATAGATGTCCCTTTTGTAGGCTTAACTGCAACCGCTACTGAAAAGGTTCAAGTTGACATCATAAATTCCCTGAAACTGGAAAATCCTTTTGTTTCTGTGGGTTCATTTGATCGTGCAAATCTTTTTTATGGTGTCAAGCCATTTAATCGAGGACAACATTTTTTGGATGGGCTTGTGAGGGAAATTTCGAGATTTGTTGCTACTGGTGGTCCAACTATTGTTTACTGCACAACAATCAAAGATGTAGAACAGGTATCCAAGTTTCTTTTGGAAGTAGGTATTAAGGCTGGAATTTATCATGGCCAAATGGATAGAAAAGCTCGCGAGGAGTCTCATAGattattTGTTAGAGATGAAATTCAAGTCATGGTTGCCACAGTTGCATTTGGAATGGGTATAGATAAGCCAAACATAAGACAGGTGATACATTATGGTTGCCCTAAGAGTATAGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTAGAGATGGTATAGCCTCTGTCTGTTGGCTCTATTACACAAGAAGTGACTTTGCAAAGGGCGACTTCTATTGTGGAGAAATTCAATCAGAAGACCAAAGAAAAGCCGTTAGGAAGTCATTGGAGGCTGCTGAACACTACTGCTTGCTGGCAACTTGTAGAAGAAAGTTCTTGCTTGAATACTTTGgggaaaaaatttcaactgaTAGATGtgGAAATTGTGATAACTGCATTACCTCAAAAAAGGAGCGAGACATGTCGAGAGAAGCATTTCTTCTAATGGCATGCATTCAATCGTGCAAGGGAAATTGGGGCCTTAATATGCCCATTGACATCTTGCGCGGGTCTCGAGccaagaaaattattgatgCTCAGTTTGACAAGCTTCCACTTCATGGACTCGGAAAAGCTTACCCAGCGAATTGGTGGAAAGCACTTGGACAACAATTAAAATCTCGTGGTTATCTGAAGGAGACTGTCAATGATGTGTACAGATTTATAAGTGTCACTTCAAAAGGAGACAAATTTTTGGCCTCTTCTACACCAGATAATCAACCACCCTTAGTTTTGCCAGTGACTGCTGAAATGGTTGATGATGAGGAAAATACAActgaacaagaagaaaacaaaactttagCTACTTCAGAATTTGAGGGTTTTTCAGAGGCTGAGAGACAGTTCTACCAAATGATTTTGGAAGAGAGATTGAAGCTTGCAAGAAGTATTGGGACAGCTCCATATGCCATATGTGGAGACCAAACAATCAAGAAAATTGCATTGACAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAGACATGGAGatcattttcttcaagttATATTGCAACTGTCACAACAATTAAACCTTACGTTGGATGGGGAAGCAAATTTGCAAACTACCACCGTGAGAAAAGTGTCTCCACTAACCAATGTACGAAAGAAGATGACGCCAGCAAAGCTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTGTTCAGATGATTGCTAACCATACAGGTAGAGCGGCTCCTATAAAAGAACAAACTGTCATTGAATACCTCCTGGAAGCTGCCCAAGAAGGTCTGCCTTTTGATTGGACTAGATTCGGTGAGATGATTGGACTTACACATGAGATCATCTCAAAAATTCAGGCTGCTATTTTAAAGGTTGGCTCTACGGAGAAACTGAAGcccataaaaaatgaattgccAGAAGATATAAGTTATGCACACATCAAGACTTATTTGACAATGCAAAACTTAGAAAAGTCTCCTGAAGCTGAAGGCGGAGCCCACACGACAGAAAAAGATGAACTCATAAACAGTTCATCAGATTCATCACTGCCTCCACTTCGAACTCACGGTACACCTTCTGGACCTGTCAATGATTGCCGTGCACAGAACCATCTTCCATCAGTCTGTGAGGAGGAATTGCCAAGGAAACACCAGAAAGTTAGTGAACCTGAGGAAGGAAATCCAATCAAACTGAAGGCAACAGAGAGTTCCCTAGTAGGGTGGCTCAAGAACCATGATGAAGGGGTTACACTGCTTGATATTCTGCAGCACTTCAGCGGATCCAGTGAAGATTCTGTGGTTGAACTATTGGATTGCCTTGAAAGTGACTTTTTCgtatataaaaagaatggcGTGTACAGGCTTATGTA 2807 0.4061 MAAEVEHFTFGPYKIHKSQVFYTSQLSYAMVNLRPLLPVSLLSFHLETVTMEFVLKKYFGFSAFRPYQEEVIQNIIDKRDCLVVMATGSGKSLCYQVPPLVVRKTGIVVSPLISLMQDQVMALKERGIRAEYLGSAQTDRTIQTKAESGQFDILFMTPEKACLIPTSFWSNLLKVGICLFAVDEAHCISEWGHDFRVEYKKLDKLRGVLIDVPFVGLTATATEKVQVDIINSLKLENPFVSVGSFDRANLFYGVKPFNRGQHFLDGLVREISRFVATGGPTIVYCTTIKDVEQVSKFLLEVGIKAGIYHGQMDRKAREESHRLFVRDEIQVMVATVAFGMGIDKPNIRQVIHYGCPKSIESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGEIQSEDQRKAVRKSLEAAEHYCLLATCRRKFLLEYFGEKISTDRCGNCDNCITSKKERDMSREAFLLMACIQSCKGNWGLNMPIDILRGSRAKKIIDAQFDKLPLHGLGKAYPANWWKALGQQLKSRGYLKETVNDVYRFISVTSKGDKFLASSTPDNQPPLVLPVTAEMVDDEENTTEQEENKTLATSEFEGFSEAERQFYQMILEERLKLARSIGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTRHGDHFLQVILQLSQQLNLTLDGEANLQTTTVRKVSPLTNVRKKMTPAKLEAWKMWHEDGLSVQMIANHTGRAAPIKEQTVIEYLLEAAQEGLPFDWTRFGEMIGLTHEIISKIQAAILKVGSTEKLKPIKNELPEDISYAHIKTYLTMQNLEKSPEAEGGAHTTEKDELINSSSDSSLPPLRTHGTPSGPVNDCRAQNHLPSVCEEELPRKHQKVSEPEEGNPIKLKATESSLVGWLKNHDEGVTLLDILQHFSGSSEDSVVELLDCLESDFFVYKKNGVYRLM 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02525 935 SMART ultradead3 60 255 IPR014001 -
Bva12g02525 935 Gene3D - 450 574 IPR036388 -
Bva12g02525 935 Pfam RecQ zinc-binding 386 446 IPR032284 -
Bva12g02525 935 MobiDBLite consensus disorder prediction 805 847 - -
Bva12g02525 935 Gene3D - 49 245 IPR027417 -
Bva12g02525 935 Pfam RQC domain 451 547 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bva12g02525 935 Pfam Helicase conserved C-terminal domain 273 372 IPR001650 -
Bva12g02525 935 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 50 787 - -
Bva12g02525 935 Pfam HRDC domain 595 660 IPR002121 GO:0003676
Bva12g02525 935 PANTHER DNA HELICASE RECQ FAMILY MEMBER 50 787 - -
Bva12g02525 935 Pfam DEAD/DEAH box helicase 66 225 IPR011545 GO:0003676|GO:0005524
Bva12g02525 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 387 IPR027417 -
Bva12g02525 935 Gene3D - 247 449 IPR027417 -
Bva12g02525 935 CDD SF2_C_RecQ 247 382 - -
Bva12g02525 935 CDD DEXHc_RecQ 52 246 - -
Bva12g02525 935 SMART RQC_2 454 558 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bva12g02525 935 Gene3D - 2 48 IPR036265 -
Bva12g02525 935 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 239 IPR014001 -
Bva12g02525 935 SUPERFAMILY HRDC-like 589 666 IPR010997 GO:0000166|GO:0044237
Bva12g02525 935 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 54 505 IPR004589 GO:0004386|GO:0006310
Bva12g02525 935 Pfam Helix-turn-helix domain 700 797 IPR029491 -
Bva12g02525 935 SUPERFAMILY "Winged helix" DNA-binding domain 445 551 IPR036390 -
Bva12g02525 935 SMART helicmild6 292 373 IPR001650 -
Bva12g02525 935 ProSiteProfiles HRDC domain profile. 590 670 IPR002121 GO:0003676
Bva12g02525 935 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 267 418 IPR001650 -
Bva12g02525 935 SMART hrdc7 590 670 IPR002121 GO:0003676
Bva12g02525 935 Gene3D HRDC domain 589 672 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02525 Bva-Chr12 18842296 18850421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02525 281 373 Eukaryotic Initiation Factors Gene Family AT5G11170 26.882 6.86e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02525 K03654 - gmx:100797777 1324.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02525 12 18842296 18850421 Bva12g02525 12 18842296 18850421 ECH