Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02509 ATGGCAGTTGACTCCATCGAGCCCGCCAGCGATGTCAAGCTCTTCAATCGTTGGACCTTTGAGGATGTTCAGGTGAACGACATATCTTTGGTTGATTACATTGGTGTGGTTCCTGCCAAGCATGCTACCTATGTACCACACACTGCTGGGAGGTATTCAGTGAAGCGTTTCAGGAAAGCCCAATGTCCAATAGTGGAGAGGCTGACCAACTCTCTTATGATGCATGGAAGAAATAATGGGAAAAAGCTTATGGCCGTAAGGATTGTAAAACATGCAATGGAAATTATTCACTTGCTCACTGAACAAAATCCCATTCAAGTCATCGTCGATGCTGTGGTCAACAGTGGACCAAGAGAAGATGCTACCCGAATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCCGTGGATATTTCTCCCCTGCGACGGGTGAATCAGGCCATCTATCTTCTGACAACAGGTGCTCGTGAGGCTGCATTCAGGAACATTAAGACAATTGCAGAATGCTTGGCTGATGAACTTATCAATGCTGCCAAGGGTTCATCAAACAGCTACGCCATTAAGAAGAAAGACGAGGTTGAGAGAGTTGCCAAGGCAAACCGTTG 602 0.4684 MAVDSIEPASDVKLFNRWTFEDVQVNDISLVDYIGVVPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTEQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02509 200 TIGRFAM uS7_euk_arch: ribosomal protein uS7 12 200 IPR005716 GO:0003735|GO:0006412|GO:0015935
Bva12g02509 200 Pfam Ribosomal protein S7p/S5e 54 200 IPR023798 -
Bva12g02509 200 Gene3D Ribosomal protein S7 domain 1 200 IPR036823 -
Bva12g02509 200 PANTHER 40S RIBOSOMAL PROTEIN S5 4 200 - -
Bva12g02509 200 ProSitePatterns Ribosomal protein S7 signature. 66 92 IPR020606 GO:0003723|GO:0003735|GO:0006412
Bva12g02509 200 PANTHER RIBOSOMAL PROTEIN S7 4 200 IPR000235 GO:0006412
Bva12g02509 200 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 200 IPR000235 GO:0006412
Bva12g02509 200 SUPERFAMILY Ribosomal protein S7 13 200 IPR036823 -
Bva12g02509 200 CDD uS7_Eukaryote 13 200 IPR005716 GO:0003735|GO:0006412|GO:0015935
Bva12g02509 200 Coils Coil 188 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02509 Bva-Chr12 18782194 18784281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02509 10 200 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 91.623 1.76e-133 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02509 K02989 - csv:116401620 369.007