Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02504 ATGAAGCTTTCAACATCAGGGTTGGGTCAACAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCGGAGCTATGGCATGCATGCGCGGGCCCCCTCGTGTCCCTACCAACTGCGGGGACTCGTGTGGTGTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAACAGAGAGGTTGATGGGCACATGCCCAATTATCCGAGCTTGCCTCCCCAGTTGATTTGCCAACTTCATAATGTCACAATGCATGCAGATGTTGAAACTGATGAAGTATATGCTCGAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCAATGGAATTGGGTATTCCAAGTAAGCAGCcctcaaattatttttgcaaGACATTAACGGCTAGTGACACAAGCACACATGGAGGGTTCTCTGTTCCTCGCCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCCCAGCAACCACCAGCGCAGGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGAGGACAGCCAAAGCGGCACCTTCTTACAACAGGCTGGAGTGTTTTTGTTAGTGCCAAGAGACTTGTGGCGGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATTCGTCATGCCAATCGACCCCAAACCGTGATGCCATCATCAGTTCTATCAAGTGATAGTATGCACATTGGACTCCTTGCAGCTGCTGCTCATGCTGCAGCCACAAATAGCTGTTTTACAGTCTTCTATAATCCAAGGGCTAGTCCAGCAGAGTTTGTCATCCCTCTTTCTAAATATATCAAAGCAGTGTACCATACACGTGTTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTTCGCAGGTACATGGGTACAATAACTGGCATAAGTGATCTTGATCCTGTTCGTTGGCCAAATTCTCATTGGCGGTCTGTGAAGGTTGGTTGGGATGAATCAACAGCAGGGGAGAGACAGCCACGAGTATCGTTATGGGAAATTGAGCCTTTAACAACTTTCCCTATGTATCCGTCACTATTTCCTCTCAGATTGAAACGTCCATGGCATCCTGGCCCCTCATCTTTGCTTGATGGCAGAGATGATGCAACTAATGGGCTAATGTGGCTGAGAGGTGGAGACCAGGGTCTTAACTCTATTAATTTTCAAGGTGTTGGTTTGTTGCCCTGGATGCAGCAGAGGCTGGATCCAACCTTGCTTGGAAATGATCATAATCAGCAGTATCAAGCCATGATGGCAGCTGGTTTGCAGAGCCTAGGGAATGGAGATCTCTTAAGGCAGCAAATGATGCATTTTCAACAGCCTTTTAACTACCTTCAACAAGCAGGAAACCATAGTTCTCGGCAACTTCAGCAGCCAGTCCCTTCCAATATACTGCAGCCACAAGGGCAAGTATTGACAGAGAATCTGTCACAGCATCTCCTTCAAAAGTCTCATAAAAATCAAGAAGACCAAGCACAGCAGCAGCAAAGTACTTATCATGATACACTTTTGATTCAAAATGATCAGCTCCATCAGAGGCAACACTCTAATGTACCATCACCATCATATTCTAAACCAGATTTCTTAGATTCTACTGTCAAATTCTCTGCATCAGTTCCCTCTGGACAAAGTATGCTTAGTTCACTTTGTCCTGAAGGTAGTGGCAACCTTTTGAACCTATCGAGAAGCAGTCAGCCTGTACTGACTGAACAGTTGCCTCAACAATCATGGAATCCAAAGTATCCATCTATGCAGGTCAATGCTTTTGGCAATTCAGTGTTGCACACGCAATATACTGGAAAAGATTCTGCAATGGTGCCATCACATTACAATTCAGATACCCAAAATCCTACACTCTTTGGTGTTAACATTGATTCATCTGGCCTTCTGCTCCCCACCACTGTCCCTGGTTTTACCAGTTCACCAGCTGGTACTGAAGCCTCAACAATGCCACTGGGGGATTCTGGATTTCAGAGTCCTCTATATGCTTGCATGCAAGACTCGTCAGAGTTGTTGCAGAGTGCAGGGCAAATTGACccacaaaaccaaaatcagaCATTTGTCAAGGTTTACAAATTAGGGTCGGTTGGGCGCTCACTCGACATCTCACGGTTCAGCAGCTATCACGAACTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGACCCGTGGGAATCCTTTGTGAACAATGTCTGGTACATCAAAATACTTTCACCAGAAGATATTCAGAAAATGGGAGAGCAGCAACCAGAATCTCATGACCTTGTTTCTGGGCTACCATCTGTTGGCTCACTTGAATATTG 2456 0.4524 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHMPNYPSLPPQLICQLHNVTMHADVETDEVYARMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPAEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGPSSLLDGRDDATNGLMWLRGGDQGLNSINFQGVGLLPWMQQRLDPTLLGNDHNQQYQAMMAAGLQSLGNGDLLRQQMMHFQQPFNYLQQAGNHSSRQLQQPVPSNILQPQGQVLTENLSQHLLQKSHKNQEDQAQQQQSTYHDTLLIQNDQLHQRQHSNVPSPSYSKPDFLDSTVKFSASVPSGQSMLSSLCPEGSGNLLNLSRSSQPVLTEQLPQQSWNPKYPSMQVNAFGNSVLHTQYTGKDSAMVPSHYNSDTQNPTLFGVNIDSSGLLLPTTVPGFTSSPAGTEASTMPLGDSGFQSPLYACMQDSSELLQSAGQIDPQNQNQTFVKVYKLGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQQPESHDLVSGLPSVGSLEY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02504 818 Gene3D - 704 797 - -
Bva12g02504 818 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Bva12g02504 818 SMART B3_2 128 230 IPR003340 GO:0003677
Bva12g02504 818 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 810 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva12g02504 818 CDD B3_DNA 127 220 IPR003340 GO:0003677
Bva12g02504 818 PANTHER AUXIN RESPONSE FACTOR 1 810 - -
Bva12g02504 818 MobiDBLite consensus disorder prediction 798 818 - -
Bva12g02504 818 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva12g02504 818 Pfam AUX/IAA family 704 792 IPR033389 -
Bva12g02504 818 Gene3D - 292 364 - -
Bva12g02504 818 SUPERFAMILY CAD & PB1 domains 704 782 - -
Bva12g02504 818 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Bva12g02504 818 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Bva12g02504 818 ProSiteProfiles PB1 domain profile. 708 792 IPR000270 GO:0005515
Bva12g02504 818 Gene3D - 126 229 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02504 Bva-Chr12 18761712 18769562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02504 98 798 B3 DNA Binding Superfamily AT5G37020 68.524 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva12g02504 AUX_IAA 2.6e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02504 - - gmx:100784804 1465.29