Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02487 ATGGCACCAGTTTCATTGCCTCCAGGTTTCCGGTTCCACCCCACCGATGAAGAGCTCGTGGCTTATTATCTCAATAGGAAGATTAATGGCCGAAAGATCGAACTTGAGATCATCCCTGAGGTTGATCTCTACAAGTGTGAACCTTGGGACTTGCCagGAAAGTCATTGTTACCGGGAAAGGATTTAGAATGGTATTTCTTTAGCCCTCGGGATAGGAAATACCCCAATGGATCAAGGACCAACCGAGCCACTAAATCTGGATATTGGAAGGCCACAGGGAAAGATAGGAAAGTGAGCTCTCAATCTCGTGCTGTGGGTAGTAAGAAAACCCTGGTTTACTATCGAGGAAGAGCACCACATGGTTCCCGTACAGATTGGGTTATGCATGAGTATCGTCTCGATGAGAGGGAATGTGAAACTGCTTCTGGGTTGCAGGATGCATATGCACTTTGCCGTGTGTTCAAGAAGACTGCAGTGGTTGCACCAAAACTTGAAGATCAGCACTATGTTAGTAGCCATGCAAACCAGATTACCAGTGATCAGTCATCGGCCAGCATTGAATTATACTCTGAAGGAAGATGCGAAGATTTAGATCAGAGCTCAGATTACTTGATGCCATTGGATACTTGCTCACCCCATATGGGAGCTTCActcaatatcaataataatactaatggTGCAATAAGGGATCATGGGAAATGGTCACAGTTCATATCAGAAGACCCTTTCAGCCTTCCAACTTCTTCATTTCCAAATTGTGGAGCCATATCATACCCTCCCTCCAAGGTGGATATAGCACTAGAGTGTGCAAGAATGCAGCATAGGTTTACCATGCCTCCATTGGAGGTGGAGGACTTTCCTCAAGTGGGAATTTCTGAACTGAAGATGCCGCATGGTGCCATGCATGGAAGCTGCAGAAATGATGAGACGACGGATATCTTGCAGGAAATTCTTTCAGTTGCTCAAGCTTCTCAGGAACTCATAAACCAGTCCAAATATTCAACACATAACACATGGAGTGGAAATGAAAGTTATGCTCCACAAGATGATTTCACATTCATGGTTGGCAAAGACACTCATGATTACAGCCATCTCAATGATGCAAGTTCCATGAGATATATGGACAAAACATGGGAAGATCCAAACCCTATGAGGTCTATAGATATCGGAGACTTGGATGAAGAATTCAAGACGGAGAGGatggtggagaatttgagatgGGTTggaatgtcaagcaaagatttaGAAAAGAGCTTTATGGAAGAGCAAAAGATTGTTCAAATTGAAGatatttcaagttttcaaGCAAGCAGAGAAGAGGTTGATGAGGTGCAAGGAGACCATAGTGAGCTGAATAATAGCAACAAGCACTTCAACGATTCGGAAATCAATGATTTCCCATTAGGGTTCATCAATGAACATGACCCCAATGAGAACTTCATAGATGATGGAAACATGGATGATGATTATTCCAATTCTCCAAGCTTTGAGGTTGTGGAAGAAACCAAAGTCAGCCATGGAATGTTTGTTTCAACTCGCCAAGTAGCCGAGACATTCTTCCACCAGATAGTTCCTTCAGAAACAGTCAAGGTTCAATTAAACCCGGTCATAGCAAAAAACAATCTTTCCATAAATCATCATGAAGCTGTGACCAAAACGACACCGGAGAACCCAGGGTCCTTCTTCAGAAAATTCAAGTCCTATATGATGGGGAAGCTAATAAAACCATCAAAGACAATAGCAAGTGCCATTGTACACATCTTTGCACTTCTATTGATGCATTATATTTACTTGGAGGAACAAATGGAGAATTTCAAGTCATCAGATCCAGAGGATGTGAAGGAGAAAGGTTGCTGCTGTGCTATTAACACAATGAAGAGATCAAGGCAATTATCTGCTGATAAAATCCAATGCAGTGTGAGTCAAGAAAAGGTTTGGTTTGTTGGTATCAAAAGTGGGAAAGGGTTTAGTGTGGTGTTGAAGAAGATAGGCATTTTTCTCAGCATATCATTGGCTCTTTGTACCATGTGGGCTAACCACATACACAATTA 2051 0.4096 MAPVSLPPGFRFHPTDEELVAYYLNRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVSSQSRAVGSKKTLVYYRGRAPHGSRTDWVMHEYRLDERECETASGLQDAYALCRVFKKTAVVAPKLEDQHYVSSHANQITSDQSSASIELYSEGRCEDLDQSSDYLMPLDTCSPHMGASLNINNNTNGAIRDHGKWSQFISEDPFSLPTSSFPNCGAISYPPSKVDIALECARMQHRFTMPPLEVEDFPQVGISELKMPHGAMHGSCRNDETTDILQEILSVAQASQELINQSKYSTHNTWSGNESYAPQDDFTFMVGKDTHDYSHLNDASSMRYMDKTWEDPNPMRSIDIGDLDEEFKTERMVENLRWVGMSSKDLEKSFMEEQKIVQIEDISSFQASREEVDEVQGDHSELNNSNKHFNDSEINDFPLGFINEHDPNENFIDDGNMDDDYSNSPSFEVVEETKVSHGMFVSTRQVAETFFHQIVPSETVKVQLNPVIAKNNLSINHHEAVTKTTPENPGSFFRKFKSYMMGKLIKPSKTIASAIVHIFALLLMHYIYLEEQMENFKSSDPEDVKEKGCCCAINTMKRSRQLSADKIQCSVSQEKVWFVGIKSGKGFSVVLKKIGIFLSISLALCTMWANHIHN 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02487 683 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Bva12g02487 683 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 407 - -
Bva12g02487 683 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Bva12g02487 683 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Bva12g02487 683 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 407 - -
Bva12g02487 683 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02487 Bva-Chr12 18691940 18696121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02487 1 676 NAC Transcription Factor Family AT1G65910 45.997 9.12e-177 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva12g02487 NAM 7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02487 - - gsj:114381841 908.286