Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02486 ATGACAATGGGAGAAGAGTCCATATCAGCAATCCCATTTGACAGAGCTGTTGAACAGGCAATTGTGTCTATAAAGAAAGGTGCTTACTTACTCAAGTGTGGACGTAGAGGAAAGCCAAAACTTTGCCCTTTCAGACTTTCTCCGgatgagaaaattttgatttggtaTTCTGGGCAGCAGGAAAAGCATTTGCGACTTACTGcagttacaaaaattattcaagGGCAGGGAAATGTAAGGCCACAGAGGCAAAATCAACCTGAAAAGGAGTGCCATTCATTTTCACTGATCTATTCCAATGGTGAACGCTCGCTTGATCTGATATGCAAGGATAAAGCCCAGGCAGCTACTTGGTTTGTGGGCTTGAAAGCTGTGATATCTAGGTCCCAGCATCCTAGGCCTTTCAGTAGTTTAAGAAGCTGCAAAGGAATACAGAGTTGTGTCAGTAGTCCAGCTGGAATCTtacgaagaaagaaaaacctaGGCCTTCTGGAGGATACTACAGATTTTTCCCAGGTACGCAGCTTGTGTGCAAGTCCTACTCTGTCACTTTCAGAAAGGTGCTTTTCTGATGGCTTAACGTATGCTTCTGATAGCTTCTACTCATGGGAGTCATTTGTATCCAGTAAAAGTGTACCAGATGTTTCAATCCCAAATTCTCCATATATTGATCCAAAGTCTTCCAAAAAGGGTGGATCAGCATGTCTTGACACTGAAGATGAGAAGAATTCGCTTTACCGATATCTGATGCCTCCTACCTGCCCATATGTAGGAAATAATAATGTGCTGAAGGATGTGATGATCTGGGGTGGATGTATTGGAGGGACAGCAGGGAGTGGGAATGACAGGTTTGTCAACCATAATGAAAACCATGCTGTACTGCCAAATTTACTAGAATCCGCCATGATGTTAGATGTGCAAAATATTGCTCTCGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTTTTCTGCTGGGGTCAAGGGAAAGGGGGAAGGCTGGGAAATAAGATTGATGTTGATATAAATTCCCCCAAAATTGTTGAGTCTCTTAATGGGAACCATATAAAAAGTGTTGCCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACTTGGGGTGATGATGGTTCTGGTGCAGACTTCGGTTCTAAAAGGACACACAGAAGTCAGTGGATACCATATAAACTTTCTGCTTTGGATGGTGTTAGTATTTTAAGTATTGCTTGTGGGGAATGGCATACAGCAATTGTTTCTTCCTGTGGGCGTCTATTTACATATGGAGATGGTACATTTGGAGTTCTTGGGCATGGGAACCTTCAGAGCATTTCTCAACCAAAGGAAGTTGAATCTCTTAGAGGTCTAAGGGTAAGATCTGTTGCTTGTGGATCATGGCATACAGCTGCCATTGTCGATGTCATGGTTGACCGTTTTAAGTACAATACCTCTACTGGGAAGCTGTTTACCTGGGGTGATGCAGATGAAGGGAGGCTTGGTCATGTTGATAATGGAAGGAAGCTTTTACCAACATGTGTTTCTCAACTTGTGGATTATGATTTCATCCAAGTATCTTGTGGAAGAACGCTGACTGTAGCACTTACTAATCTGGGTAAAGTTTTCACAATGGGAAGTGCTGTTCATGGCCAGCTGGGGAATCCGCATGCCAAAAGTAAAGCAGTGACAATAGTTGAAGGGCTACTTAAACAGGAGtttgttaaaagaatatcATCAGGTTCATATCATGTTTCTGTCTTGACATCCGCAGGGAGTGTCTATACATGGGGCAAAGGTGCAAATGGGCAACTTGGGTTAGGTGACACTGAGGACAGAAGCTCCCCTTCCTTTGTGGAGGCTCTAAGGGACAGGCAAGTAGAAAGCATTACTTGTGGGTCAAACTTCACAGCTGCAATCTGTTTACACAAACCAATTTCTGTTAGTGACCAGTCAGCTTGTAATGGTTGTAAGTTGCCTTTTGGTTTTACAAGGAAGAAGCACAACTGTTATAACTGTGGTCTTCTCTTCTGCCATGCATGCAGTAgtagaaaaatcacaaatgcATCTCTAGCACCAAATAAGAGCAAGGCTTTTCGGGTTTGCGATCAGTGCTTCAATAAACAGCAAGCAAGAACACATTCAGTTAATGTATCCAAATCAAGTAATCACTATACTCAGCAGCTACTGAAGAATCGCAAGAAGTTTCCTGATCTGACAGAAGATAGAGGAGAAACAACTGTGACACAAGGTCCTTTATTGTCTCTCAGTCAATCATGTTACAGAAAAAGCACGCCTAGTGGAAGGAAGGAGTGGATGATCCAGCAAGAAAGCCAGCAccatttggaaaatatttcttctgtTTTGGGTGGAGTTCCACAATGGGGTCAAGTTCCTTGCCCTGccttgtttaaaattaattgcagaGAAAATTCAGTTGGGCCTGTTTCTCTGTCCAAGATTAAATCAGCATCTGTTACCTCTCATAACTTAGAATCTACAGTTTCCAACGCGACAAATTCAGAGAAAGATATagcaaaatcagaaaaaatgcTCATGGAAGAAGTACAGAGATTGAGAGCTCAGACTAGGAGACTTGAAGAGCAATGTGAACTCAGAGACCGTGAGTTACAAGAATGTCATAAAAAACTTGAAGACAGTTGGTTCTTGGCAAAGGAGGAGGCTGCAAAGTGTAAGGCAGCTAAGGATGTCATAACAGCTTTGGCATTAAGGATTCACACACTATCAGGAAAAACTAATGCTGGGCAAGAAGGAAAGGTTGTGGCAGATGAATATCTGCCTAATTTATCGCCCATACTTACAGATACCAATACTCCAAAAGATGGCAAAGTCAGTAGTCTATCTAGTTCCCCTATAGTATTCTCTGGCAgattaaaatccaaatttggGAGAAGCATGTTCCTCAAAAGTGATAGATCAATAGAGGATCCCCACTGCACTAGAGCAGAATCTCAACAAGACAGCACCGAAGACTCGGCGGTTGAATGGGTAGAAGAGTTTGAGAGTGGTGTTTACATCACACTGGCAAAGTTACCCAGTGGGCAAAAGGGCCTTAAGAGAGTGAGATTCAGTCGGAGGAAATTCTCAGAGAAGGAAGCTGAGAAGTGGTGGGAGCAAAATCAAGACAGAGTCTACCATAAGTATGAGATGGAAGGATATGTAAACACAAGCCAAAATCGGGTGAAGGGCTA 3224 0.4079 MTMGEESISAIPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDEKILIWYSGQQEKHLRLTAVTKIIQGQGNVRPQRQNQPEKECHSFSLIYSNGERSLDLICKDKAQAATWFVGLKAVISRSQHPRPFSSLRSCKGIQSCVSSPAGILRRKKNLGLLEDTTDFSQVRSLCASPTLSLSERCFSDGLTYASDSFYSWESFVSSKSVPDVSIPNSPYIDPKSSKKGGSACLDTEDEKNSLYRYLMPPTCPYVGNNNVLKDVMIWGGCIGGTAGSGNDRFVNHNENHAVLPNLLESAMMLDVQNIALGGKHAALVTKQGEVFCWGQGKGGRLGNKIDVDINSPKIVESLNGNHIKSVACGEYHTCALTDSGEVYTWGDDGSGADFGSKRTHRSQWIPYKLSALDGVSILSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNLQSISQPKEVESLRGLRVRSVACGSWHTAAIVDVMVDRFKYNTSTGKLFTWGDADEGRLGHVDNGRKLLPTCVSQLVDYDFIQVSCGRTLTVALTNLGKVFTMGSAVHGQLGNPHAKSKAVTIVEGLLKQEFVKRISSGSYHVSVLTSAGSVYTWGKGANGQLGLGDTEDRSSPSFVEALRDRQVESITCGSNFTAAICLHKPISVSDQSACNGCKLPFGFTRKKHNCYNCGLLFCHACSSRKITNASLAPNKSKAFRVCDQCFNKQQARTHSVNVSKSSNHYTQQLLKNRKKFPDLTEDRGETTVTQGPLLSLSQSCYRKSTPSGRKEWMIQQESQHHLENISSVLGGVPQWGQVPCPALFKINCRENSVGPVSLSKIKSASVTSHNLESTVSNATNSEKDIAKSEKMLMEEVQRLRAQTRRLEEQCELRDRELQECHKKLEDSWFLAKEEAAKCKAAKDVITALALRIHTLSGKTNAGQEGKVVADEYLPNLSPILTDTNTPKDGKVSSLSSSPIVFSGRLKSKFGRSMFLKSDRSIEDPHCTRAESQQDSTEDSAVEWVEEFESGVYITLAKLPSGQKGLKRVRFSRRKFSEKEAEKWWEQNQDRVYHKYEMEGYVNTSQNRVKG 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02486 1074 PANTHER F12P19.9 PROTEIN 16 1062 - -
Bva12g02486 1074 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Bva12g02486 1074 Coils Coil 853 880 - -
Bva12g02486 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 492 540 IPR000408 -
Bva12g02486 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Bva12g02486 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 429 477 IPR000408 -
Bva12g02486 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Bva12g02486 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 374 424 IPR000408 -
Bva12g02486 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 428 IPR000408 -
Bva12g02486 1074 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Bva12g02486 1074 PRINTS Chromosome condensation regulator RCC1 signature 431 445 IPR000408 -
Bva12g02486 1074 PRINTS Chromosome condensation regulator RCC1 signature 533 551 IPR000408 -
Bva12g02486 1074 PRINTS Chromosome condensation regulator RCC1 signature 415 431 IPR000408 -
Bva12g02486 1074 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Bva12g02486 1074 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Bva12g02486 1074 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Bva12g02486 1074 SMART fyve_4 646 715 IPR000306 GO:0046872
Bva12g02486 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 650 725 IPR013083 -
Bva12g02486 1074 SUPERFAMILY PH domain-like 16 126 - -
Bva12g02486 1074 CDD FYVE_like_SF 657 710 - -
Bva12g02486 1074 Pfam Transcription factor regulating root and shoot growth via Pin3 1006 1059 IPR013591 -
Bva12g02486 1074 ProSiteProfiles BRX domain profile. 1005 1060 IPR013591 -
Bva12g02486 1074 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 467 477 IPR000408 -
Bva12g02486 1074 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Bva12g02486 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 544 595 IPR000408 -
Bva12g02486 1074 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1062 - -
Bva12g02486 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 429 480 IPR000408 -
Bva12g02486 1074 SUPERFAMILY FYVE/PHD zinc finger 651 727 IPR011011 -
Bva12g02486 1074 Gene3D - 16 133 IPR011993 -
Bva12g02486 1074 Gene3D - 392 481 IPR009091 -
Bva12g02486 1074 Gene3D - 257 391 IPR009091 -
Bva12g02486 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Bva12g02486 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Bva12g02486 1074 CDD PH_PLC_plant-like 15 127 - -
Bva12g02486 1074 Gene3D - 487 649 IPR009091 -
Bva12g02486 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Bva12g02486 1074 Pfam FYVE zinc finger 653 713 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02486 Bva-Chr12 18683723 18688805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02486 966 1064 Major Intrinsic Protein MIP AT1G31880 36.364 1.87e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02486 - - adu:107481014 1571.99