Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02481 ATGGTGGTGTCTGCATCTATGGCGATTCAAGATCAAAATGGAGTTACAAGATCTCCAGTCGGAAACGGAGTGTCTGTGAGTTCAGGACTACATTCTGCTTCACCTATTCAACTAAATGATCAGTTTTCTTGTGGAAATGACTTTGCTCCAAAGGCAAGGAAACCATATACCATCAccaaacagagagagagatggaCAGATGAAGAGCATAAGAAGTTCCTTGAAGCTTTGAAGTTGTACGGCCGGGCGTGGCGCCGGATTGAAgAACATGTTGGCACAAAGACTGCAGTTCAGATTCGAAGCCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGAGTCAAGTGGAAGCAGCACGAGCTCAATGGAGTCCATTGAAATTCCGCCTCCACGGCCGAAGCGAAAGCCTATGCACCCTTACCCTCGTAAGCATGTTGAGCCTTCTGCTAGAGAAGTTTCCAACCTAGAGCCGCCAATTATGTCTGAGTCTCTGAAGTCGTTAAATTTTGAGCAAGAAAACCAATCTCCAAAGTCAGTGTTATCTGCAAATGGTTCAGACACACTTGCTTCCTCTGACTCAGATACACCCAATGGAAGTTCTTCCCCCATATCTTCCATTAGTGGTGTCCACACCAGCAGCTTTGGAGTTGATCAGCGTAAAATGTTATCTGAGGAAGATGGATCTCCGCCACCGGCAAGAGTAAACGCCGGAGCAGCTCTTGATGAGCAAGCTCATATGaaatttcagCTTTTTCCTGAAGAGGGTGTTTCTGCGAAAGAAGATGCAGCAGAAAAATCACCTGGTAGAACTGTTAAGCTTTTTGGGACAACTTTGCTGGTAACTGATACCTGCAAGCCATCCTCTCCAACAGCGGAGGCAAGCAAATCAAAGCCTTTATACGAGGCAAAAACTGTGCAAGCATCACATGGCGCCATGTATATCATGCAACTTCAGAATGGAATCCTGGCACAAAGTCCTACTCCTACTACTGCTTTTGTTCCATGGTGTAAAGTTAGGCCTTTTATCCCATTGCCACAACAAAGGGAAGAGAGCGTTGGGAAACACTCGGAATCTAATTTTGGGGAAGTTGAAGACACAGAAATTCAGAAAGAATGGTCTTGGAGTGGTTCAAACACTAGTGCAGATAATGCTGAAAAACCAGATATTGAAGCCAAAACCAGTTCTCAGCAGAGGGCTAGAAACTGTGCAAAAGGGTTTGTTCCATATAAAAGGTGCATTGCtgagagagaaggagaaaaccAGTCCTGTGCAGAGGATAGGGAAGAGCAACGCATTCGTCTTTCCTTATA 1310 0.4328 MVVSASMAIQDQNGVTRSPVGNGVSVSSGLHSASPIQLNDQFSCGNDFAPKARKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRESSGSSTSSMESIEIPPPRPKRKPMHPYPRKHVEPSAREVSNLEPPIMSESLKSLNFEQENQSPKSVLSANGSDTLASSDSDTPNGSSSPISSISGVHTSSFGVDQRKMLSEEDGSPPPARVNAGAALDEQAHMKFQLFPEEGVSAKEDAAEKSPGRTVKLFGTTLLVTDTCKPSSPTAEASKSKPLYEAKTVQASHGAMYIMQLQNGILAQSPTPTTAFVPWCKVRPFIPLPQQREESVGKHSESNFGEVEDTEIQKEWSWSGSNTSADNAEKPDIEAKTSSQQRARNCAKGFVPYKRCIAEREGENQSCAEDREEQRIRLSL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02481 436 MobiDBLite consensus disorder prediction 169 210 - -
Bva12g02481 436 SUPERFAMILY Homeodomain-like 56 109 IPR009057 -
Bva12g02481 436 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Bva12g02481 436 MobiDBLite consensus disorder prediction 350 369 - -
Bva12g02481 436 MobiDBLite consensus disorder prediction 110 125 - -
Bva12g02481 436 CDD SANT 64 107 IPR001005 -
Bva12g02481 436 MobiDBLite consensus disorder prediction 370 384 - -
Bva12g02481 436 PANTHER SWI/SNF COMPLEX-RELATED 27 424 - -
Bva12g02481 436 SMART sant 61 109 IPR001005 -
Bva12g02481 436 ProSiteProfiles SANT domain profile. 60 111 IPR017884 -
Bva12g02481 436 Gene3D - 64 110 - -
Bva12g02481 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Bva12g02481 436 MobiDBLite consensus disorder prediction 347 400 - -
Bva12g02481 436 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Bva12g02481 436 MobiDBLite consensus disorder prediction 110 156 - -
Bva12g02481 436 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Bva12g02481 436 PANTHER PROTEIN REVEILLE 7-RELATED 27 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02481 Bva-Chr12 18655645 18658981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02481 48 126 MYB Transcription Factor Family AT5G39700 27.174 8.77e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva12g02481 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02481 - - gmx:778060 414.461