LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g02479	ATGGGAGGCGGTGGACTTCACGGCCACCGTAATGTCGATGTCGCCGTAGCCCCTCGGAACACAGCGCTGGAGGAACTTTTTCAAGGTTCATTGTCTGGAGGGCggctgaatatatatatagtgctgAGACTTGGTTCGGTCAATTACTGTTATTTATGAGAAGAAGCTGCCGTAGCACCTGCTGAGGCTTCAACACCTTTAGGTGAGGATGTGGACATCATAACAGCATTACAGCTTGTGTTGAAGAAGTCACGAGCCCACGGTGGCCTTGCCCGAGGAATCCATGAAGGTGCCAAGGTGATTGAAAAGCATGCTGTACATCTCTGTGTGTTAACTGAAGACTGTGATCAACTAGATTATGTTAAATTGATCAAGGGACTTTGTGCTGATCACAATGTCAAGTCGAAAACTGTGGCTAAAGCTAAAGCTCTTGGTGAATGGACTGAGTTCTA	452	0.4513	MGGGGLHGHRNVDVAVAPRNTALEELFQGSLSGGRLNIYIVLRLGSVNYCYLEEAAVAPAEASTPLGEDVDIITALQLVLKKSRAHGGLARGIHEGAKVIEKHAVHLCVLTEDCDQLDYVKLIKGLCADHNVKSKTVAKAKALGEWTEF	149

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g02479	149	PANTHER	40S RIBOSOMAL PROTEIN S12	54	147	-	-
	Bva12g02479	149	SUPERFAMILY	L30e-like	70	147	IPR029064	-
	Bva12g02479	149	PANTHER	40S RIBOSOMAL PROTEIN S12	54	147	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Bva12g02479	149	ProSitePatterns	Ribosomal protein S12e signature.	75	93	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Bva12g02479	149	Gene3D	-	67	149	IPR029064	-
	Bva12g02479	149	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	75	147	IPR004038	-
	Bva12g02479	149	PRINTS	Ribosomal protein S12E family signature	79	92	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Bva12g02479	149	PRINTS	Ribosomal protein S12E family signature	93	109	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Bva12g02479	149	PRINTS	Ribosomal protein S12E family signature	134	149	IPR000530	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g02479	Bva-Chr12	18635936	18637462	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g02479	66	146	Cytoplasmic Ribosomal Protein Gene Family	AT2G32060	61.728	1.57e-32	110

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g02479	K02951		-	sly:101247070	142.124