Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02470 ATGCCCTTGGAAGGGATTTTCATTGAACCTACTTCTACTGCAGCAGCTCCTCCATCTCACCCTGATCTTTCCCTTCACATAAGCCCTCCAAGCTCTTCAAAATCATCTTCTTTAATTAGGAATAGCAACAACATCCCCCAACCCGGTACCGGCTTTAATCGATATCATCAAGGCCAAAATCTAGTCTCTGCAGAGCTCTCTCTTGGTAGAGATTTCAGCAGTGGTGGAGCTGAGGAACCACCACGTAATAGCCCTTATCAGAATAACCATGTTCATtttcagcagcagcagcatctTCAGCACTCTAATGGTACTGCCACCACTACTACTGCTAGTTCTACTACTCACTTGAATCACTTGAGTTATGGAGTTTCATTGCTTGATGTGTCATCGGACGGCTTGAGGCCGATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTCTTGCCGATGGACCATACAATAAGAGACAaagatcatcatcatcatcaccacCAGCAGAAGATGTACTTATATCATCATATGCCTTCTTACCCATCTTtgtcttcttgttcttcttcctctctatGCTCTCCTTCTTCACCATACTTCGCCGCAGCAGCAGCGGGTTTGGATCCCATAACTATCTTTAACCCGGGTGCTAACGGGTCTCCGGCAGCCAATTATAGGGCAGGGAACCCCACAAGGTTTAATGGGGTAACCGGAGATGGGTTCAAATCTCACCAATTGCACCATCATTCTCAGTATGGGGTTGGTTCCTCTCATGAGTCTCCTTCTGGGTTAATGAGATCAAGATTTTTGCCTAAGTTACCCACCAAGAGGAGCATGAGAGCACCAAGAATGCGGTGGACAAGTACCCTCCATGCTCGATTTGTTCATGCTGTTGAGCTCCTTGGTGGCCATGAAAGAGCGACTCCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAGAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCTGCTTCTTCAGGCCATTCAGATGGGTCCGGAGAGGATGACATGTCTCCGGCGGGCAGCTCAGACCGTGGTGGGATGCGGCAGTTTCCGGATCAAAGAGGGCCACGGCCTGATCGGTCCTTGCAACAAGATATGGACTACTCTTCAACTAACACATTGTGGAGTAACTCTTCaagTATTAGAGAGCCATGGCCACAAACTAATTCCAACGACGTAGATGGCAGTCTCAGACCACCTCCCTTCCAGTCACAACCAAGATCAGGAGGGCATCATCAAATTCAgGAGTGTGATTCAAGCCAACTCAAGAACAATTTGTCAGGGTCGACTAATTTGGAGTGCAAGAACCCAAGCTTGGAGTTTACATTAGGCCGACCAGATTGGAGTCATGACAAATG 1418 0.4513 MPLEGIFIEPTSTAAAPPSHPDLSLHISPPSSSKSSSLIRNSNNIPQPGTGFNRYHQGQNLVSAELSLGRDFSSGGAEEPPRNSPYQNNHVHFQQQQHLQHSNGTATTTTASSTTHLNHLSYGVSLLDVSSDGLRPIKGIPVYHNRSFPFLPMDHTIRDKDHHHHHHQQKMYLYHHMPSYPSLSSCSSSSLCSPSSPYFAAAAAGLDPITIFNPGANGSPAANYRAGNPTRFNGVTGDGFKSHQLHHHSQYGVGSSHESPSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGHSDGSGEDDMSPAGSSDRGGMRQFPDQRGPRPDRSLQQDMDYSSTNTLWSNSSSIREPWPQTNSNDVDGSLRPPPFQSQPRSGGHHQIQECDSSQLKNNLSGSTNLECKNPSLEFTLGRPDWSHDK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02470 472 MobiDBLite consensus disorder prediction 93 112 - -
Bva12g02470 472 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 469 - -
Bva12g02470 472 MobiDBLite consensus disorder prediction 25 55 - -
Bva12g02470 472 MobiDBLite consensus disorder prediction 9 55 - -
Bva12g02470 472 MobiDBLite consensus disorder prediction 335 472 - -
Bva12g02470 472 MobiDBLite consensus disorder prediction 383 457 - -
Bva12g02470 472 Gene3D - 280 337 - -
Bva12g02470 472 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 469 IPR044847 GO:0000976|GO:0006355|GO:0010158
Bva12g02470 472 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 281 334 IPR006447 GO:0003677
Bva12g02470 472 SUPERFAMILY Homeodomain-like 278 334 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02470 Bva-Chr12 18588418 18593454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02470 135 472 G2-like Transcription Factor Family AT5G16560 48.148 7.57e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Bva12g02470 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02470 - - ccaj:109796302 514.998