Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02465 ATGAAACCGAATTTTGATCTTGAAGTGGAGGCCTCTGCAGAAAATGAATCTGAAATTAGCAGCCAGGTGGCGTCCAACATATCTTTCTTAGAAACAACTGCAGGTCCTTGCAGTGAGAGCCTCACTTACTCTTCCAACCTTGCAAATCCGATAGGGACTGATCCAAACACAGACGCTGTCTCACTTGACTTAACTCTCAACTTGAACAATAATGATTCAGGGACAAGAGGTTCGACAGGGCGCTCACTCTCAAGCACTAGCGAGAGTAGCAATGAACCTGCCTCTCAAACTACATCAGCAACCATCCCACGAGTATTTTCTTGCAATTACTGTCAGCGCAAATTCTTTAGCTCACAAGCCCTTGGTGGCCATCAGAATGCACATAAGAGGGAAAGAACATTAGCAAAGCGGGCTATGCGTATGGGGTTTTTTTCTGAGAGATATGCAAGTCTAGCATCTCTCCCTCTGCATGGTTCTTTCAGGTCCTTAGGGATAAAAGCACATTCTTCACTGCACCAAGGTTTTTCAACAACGATGAGGCCTCCTGAGGTTAAGAGCAATGCAAGATTTGAGCAGGGATATGTGAGCATGCCCATGTTCTTGGAGGATGATGAGGCAGAACTGTTATGGCCTGGTAGTTTCCGTCAAGTTTCTGAGGTAGTTGATACACATCATGATTTCATAGTGACTAGAAATTCAGATTCAACTTTTACAGATGTGAATCCTCAACTAGATTTAGACGACTCCTCTCCAGATTTGACATTGAAACTTTG 773 0.4398 MKPNFDLEVEASAENESEISSQVASNISFLETTAGPCSESLTYSSNLANPIGTDPNTDAVSLDLTLNLNNNDSGTRGSTGRSLSSTSESSNEPASQTTSATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGFFSERYASLASLPLHGSFRSLGIKAHSSLHQGFSTTMRPPEVKSNARFEQGYVSMPMFLEDDEAELLWPGSFRQVSEVVDTHHDFIVTRNSDSTFTDVNPQLDLDDSSPDLTLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02465 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 257 IPR045320 GO:0003700
Bva12g02465 257 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 257 - -
Bva12g02465 257 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
Bva12g02465 257 Gene3D Classic Zinc Finger 83 151 - -
Bva12g02465 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Bva12g02465 257 MobiDBLite consensus disorder prediction 68 98 - -
Bva12g02465 257 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02465 Bva-Chr12 18549426 18552329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02465 1 257 C2H2 Transcription Factor Family AT1G66140 47.735 3.63e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g02465 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02465 - - gmx:100794851 358.607