Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02462 ATGGTTCTTTCTTGGACAAAAGTAAGAGTTTTTCGCCGTGCCCACAAAGGGAAAAAGCTTCCCGGTGGCGATTTGGACGTGGAAGTTGTTGTCCCTGCCCATTTCCGGTGCCCGGTGACTCTGGATTTGATGAAGGATCCGGTGACCTTGTCAACTGGGATTACCTACGACAGGGAAAGCATCGAGAAGTGGATTGAAACTGGGAATCAGACATGTCCGGTTACCAATCAGGTATTGAACAGCTTTGACACGATACCAAATCATGCCATTCGCAGGATGATTCAAGATTGGTGTGTGGAGCACAAATCTTATGGGGTCGAAAGAATTCCCACGCCTAGGATCCCGGTTGCGCCGTACCAGGTTTCCGAGACTTGTAACAAGATAATTACGGCAACTAGAGTAGGAGATGACAACAAGTGTCAAGAATTGGTGGGGAAGATCAAGGTATGGGGGAAACAGAGTGAGAGGAACAAGAGGTGTGTAGTGGACAACGGAACTGGTGCTGTGTTAGCTGCTGCCTTTGATTCATTTTCCAGCAATTCAATTGAGAAGAATGTTGCAGTATTAGAGGAGATTTTGGGGGTATTGACATGGATGCTCCCACTTGGAGAAGAAGGAAAGTCAAAGCTGGGTTCAGAAGCCTCTCTACGTTGCATGGTTTGGTTCCTAAATGGGAAAGACCTGTCTGCAAGGCAAAGCGCAGCCTTGCTGCTCAAGGAAATGCCTGTGAATGCTGTCGCCAAAACTGGAGGAGTAGCTGAAGCTTTGGTGAAAATTATTAGGGAGCCAATTGGACCCACATCTACTAAGGCTTCTTTGAGAACAATTTTCCACTTGGTTTCATCATCCGTGGACAAAGAGAGAATCAAGCAAAGATTTTCGGaattgggtttggttccattGTTGCTGGAAGCTCTTGTTGATGCCGATAGAGGGATATGTGAGAAGGCTTTCGGTGTTTTGGATTGTCTTTGTGATCGCGAAGAAGGGAAGAAACTGGCCAAAGCAAATGCTTTGACTATGCCTGTAACAGTTAAGAAGATTCTGAGAGTGTCAAATTTGGCTTCAGAATTTGCAGTGTCTCTTCTCTGGAAGCTTTGTGACGAGAAGGACGAAGGGATTCTTATTGAGGCAATTCAAGTGGGAACATTTCAGAAGCTCTTGGTTATGTTGCAGGTGGGCTGTCGTGAGAGCACGAAGGAGAAGGTTACTGAGTTGCTGAAGTTGTTGAATGCTTACAGGAGCAGAGCAGATTGCGTTGATTCATCATTGGATTTGAAGTACCTGAAGAAGCCCTTTTA 1301 0.4527 MVLSWTKVRVFRRAHKGKKLPGGDLDVEVVVPAHFRCPVTLDLMKDPVTLSTGITYDRESIEKWIETGNQTCPVTNQVLNSFDTIPNHAIRRMIQDWCVEHKSYGVERIPTPRIPVAPYQVSETCNKIITATRVGDDNKCQELVGKIKVWGKQSERNKRCVVDNGTGAVLAAAFDSFSSNSIEKNVAVLEEILGVLTWMLPLGEEGKSKLGSEASLRCMVWFLNGKDLSARQSAALLLKEMPVNAVAKTGGVAEALVKIIREPIGPTSTKASLRTIFHLVSSSVDKERIKQRFSELGLVPLLLEALVDADRGICEKAFGVLDCLCDREEGKKLAKANALTMPVTVKKILRVSNLASEFAVSLLWKLCDEKDEGILIEAIQVGTFQKLLVMLQVGCRESTKEKVTELLKLLNAYRSRADCVDSSLDLKYLKKPF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02462 433 Gene3D - 120 411 IPR011989 -
Bva12g02462 433 SUPERFAMILY RING/U-box 27 107 - -
Bva12g02462 433 CDD RING-Ubox_PUB 35 77 IPR045210 -
Bva12g02462 433 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Bva12g02462 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 12 433 - -
Bva12g02462 433 PANTHER WDSAM1 PROTEIN 12 433 IPR045185 GO:0061630
Bva12g02462 433 SUPERFAMILY ARM repeat 152 397 IPR016024 -
Bva12g02462 433 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Bva12g02462 433 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Bva12g02462 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 108 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02462 Bva-Chr12 18530858 18532336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02462 21 433 U-box Gene Family AT5G37490 48.810 2.06e-134 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02462 - - gmx:548086 593.964