Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02461 ATGACTAGAAAGAAGGTGAAGCTCCAATTCATACCCAATGACTCTGCCAGAAAAGCCACCtttaagaagagaaagaagggtTTGATGAAGAAAGTTAGTGAGCTCAGCACCCTTTGTGGCATAGATGCATGTGCCATTGTTTATAGCCCTTATGATCCTCAGCCAGAGGTTTGGCCATCAGAAATGGGGGCTCAAAGGGTGCTGGCCAGGTTCAGGAGAATGCCTGAACTGGAGCAAAGCAAGAAGATGGTGAATCAAGAGAGCTTTCTGAAGCAGAGGATCTTTAAGGTTAAAGAGCAAGTGAAGAAGCAGAGGAAAGACAATCGGGAGAAAGAAATGACCCATTTGATGCATCAGTACCTTGGTGCTGGAAAAATTCTGCACAACATGAGCATGATTGATCTGAATGATCTGTCATGGATCATGGATCGAAACATGAAGGAAATTAATAGGAGAATTGATATGCTGAGTAAAGCTCAAGAGGGTCAAAGTGAAGCCACGGTGACAgctgcagcagcagcagcaccTACAGCAACAACAGTGGCACATGGTATGATGAGGATTGGAGAGAGGCCACAGGTGGAGGTGACAGCAACAAGACAGCAACAAGTGCAAAGCTTGGACTCAAATTTGGATGCTGCCATGCAAAGGCAGGCATGGTTTATGGATCTGGTCAACAATGGTGGAGAACCGGAGATGATGCCATTTGGAGATGCCAATCACCAGAATCCATTTTGGCCAAATAACTTTTTCCCTTG 758 0.4274 MTRKKVKLQFIPNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSEMGAQRVLARFRRMPELEQSKKMVNQESFLKQRIFKVKEQVKKQRKDNREKEMTHLMHQYLGAGKILHNMSMIDLNDLSWIMDRNMKEINRRIDMLSKAQEGQSEATVTAAAAAAPTATTVAHGMMRIGERPQVEVTATRQQQVQSLDSNLDAAMQRQAWFMDLVNNGGEPEMMPFGDANHQNPFWPNNFFP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02461 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bva12g02461 252 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bva12g02461 252 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Bva12g02461 252 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bva12g02461 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva12g02461 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva12g02461 252 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 213 - -
Bva12g02461 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva12g02461 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Bva12g02461 252 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02461 Bva-Chr12 18528801 18530103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02461 1 184 Type I MADS-box Gene Family AT5G48670 54.822 8.41e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva12g02461 SRF-TF 9.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02461 - - gmx:100813231 323.939