Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02458 ATGACAAGGCAAGATGTGAGAGATGCAGCTAGGCAACACATTGGTGACACAGGCTTGCTGGATTATGTGCTGAAATCACTGAACAACATGATCGTTGGAAACTCAGTTGTTTGCCGCATTGTGAATCCAGTAACAAGGATCCTGGAATATACCATTCATGAGATTGAGAATGGGTTTAAAGCCCCAGAAGTGGAGCCTGGCGTAAAGGTCCTTGCAAAGCCCCCATCAGAGTGTACTCAAGTGCCTGATGTTTGCAGTGATGTAGCATACCTGTACAAGATTGTGCTGTTGGATCATCCAGATTCACAACTACAATTGGCAGTTCAGACGATTCTTGTTTGCAAGTACTTTGAGAAGGAATGGCCAATACCTGATGAAATGGAGCAGTTATTGACATTCATTTGCCGCTTGAAACCAAATTTCGATGACATGAGATCTGAATTAGACATAGATATGGCAGCAGGTGTGATTGTGATGGTTCCGCTGCATGCAACGGTTAAAGACTTGAAGCAAGCAGCAGAGGCTGCTCTGAGGGACACTTATGGCATTGCAGAAAGGCTTATGGTGACATTTATTGAAGAGTTGGAAGAAGTGAGTGATGATGAACTGCTGTTTGGAGTGGTTCAGTCAGGTGTGGAGCTTTGCGTGGGGGGAATTGCTATATATTTGGGAACCCCATTGAAGTATCAGGGCGGTGCTGATAATTGGAAGGTCAGGTGTGAATGTTGGGCTCAAGATGATGATGGGGAGCGAATGGTGGCATGTGACATTTGTGAGGTATGGCAGCACACCCGCTGCTGTGGCATAGAGGATTCTGAGATAGTACCTCCCCTGTTTGTGTGCTCAGGGTGCTGTGATTCACTGGTGCCTCCGAGAGCTGATTGTCCTGATGCTTTTCTGACTATCCCAACGCCTAGTCATTTGATGGAGTTTGAATATGGTTACTG 947 0.4604 MTRQDVRDAARQHIGDTGLLDYVLKSLNNMIVGNSVVCRIVNPVTRILEYTIHEIENGFKAPEVEPGVKVLAKPPSECTQVPDVCSDVAYLYKIVLLDHPDSQLQLAVQTILVCKYFEKEWPIPDEMEQLLTFICRLKPNFDDMRSELDIDMAAGVIVMVPLHATVKDLKQAAEAALRDTYGIAERLMVTFIEELEEVSDDELLFGVVQSGVELCVGGIAIYLGTPLKYQGGADNWKVRCECWAQDDDGERMVACDICEVWQHTRCCGIEDSEIVPPLFVCSGCCDSLVPPRADCPDAFLTIPTPSHLMEFEYGY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02458 315 ProSitePatterns Zinc finger PHD-type signature. 240 284 IPR019786 -
Bva12g02458 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 288 IPR013083 -
Bva12g02458 315 SUPERFAMILY FYVE/PHD zinc finger 229 288 IPR011011 -
Bva12g02458 315 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 291 - -
Bva12g02458 315 CDD PHD_MMD1_like 240 284 - -
Bva12g02458 315 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02458 Bva-Chr12 18524379 18524765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02458 1 290 PHD Transcription Factor Family AT5G22260 31.722 5.60e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02458 - - mtr:MTR_5g077750 426.017