Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02456 ATGGTTGGGAAGAAAAAGGTAAAGCTGGTGGAGAaggaagaggagaaaagagaaacgGAGAAGGAAACGGCTTCGTCCTCATCGTCATCGTCCTCGTCCTCGTCCTCGTCCTCGCAAACGTCGTCGTCAGATGAGAGAGAGTATGAGGTGCAGGATTTGAGGGACCGAATAAAATCGTCGCGAGGAAGCCGGTTTGATCTGATAGAGAACGAGTTGGGACTAAACTCGACTCGGAGGAAGTTCAGCCGCCAAGCTGTCCTCGACGGCATCAGAGTCTTCTCCGAGGACTTCGTCATTCATCCCAATAACAGGTGGTATCGGGCATGGACAGAATTCATATTGTTGTGGGCAGTGTACTCATCCTTCTTCACTCCATTGGAGTTTGGATTTTTTCGTGGGCTGCCTGAGAATCTCTTTATACTAGACATCATTGGACAAGTGGCTTTTCTTGTAGACATTGTTTTGCAGTTCTTTCTTGCTTATAGAGACAGTCAGACTTATCGTATGGTCTATAAGCGTACCCCTATAGCTCTGCGGtatttaaaatcaagttttatcTTCGATTTTCTCGGATGTCTACCTTGGGACATGATTTACAAGGCTTGTGGAAGAAGAGAGGAAGTGAGATACCTTTTGTGGATCAGATTATATCGGGCCCGCAAAGTAGATGGTTTTCTGCAGAGATTGGAGAAAGATATACGTATTAATTACATGTTCACAAGGATTTTGAAACTTTTGGTCGTTGAACTGTATTGCACCCACACGGCAGCATGCATCTTCTACTATTTGGCTACAACACTGCCAGCCTCCCAAGAAGGGTACACATGGATAGGAAGTTTAAAGTTGGGTGACTATAGTTACTCACATTTCAGAGAAATTGATCTTTGGAAGCGCTACACGACATCTCTCTATTTTGCTATTGTTACCATGGCTACTGTTGGTTATGGAGATATACATGCTGTCAATATGAGGGAGATGATATTCATAATGATATACGTTTCTTTTGATATGGTTCTTGGTGCCTATTTAATTGGTAACATGACAGCATTGATAGTCAAAGGATCAAAGACTGAAAAGTTTAGGGATAGAATGACAGATCTCTTGAAATATATGAACAGAAACAGACTGGGAAGGGATATCCGTGAACAAATAAAAGGCCATTTGCGTTTACAGTATGAGAGTAGCTACACTGAGGCTGCTGTCCTCCAGGAAATCCCCATTTCTATTCGCTCTAAGATATCTCAAACGTTATATTTGCCATACATTGAAAATGTTTCTCTCTTTAAAGGATGCAGTTCAGAATTCATCAATCAGATTGTTATTCGGCTTCATGAAGAATTTTTTCTACCAGGGGAAGTGATAATGGAACAAGGAAATGCCGTAGATCAACTATACTTTGTCTGTCATGGTGTTCTGGAGGAAGTAGGCACATGTGAAGATGGATCTGAAGAGACTGTTTCACTACTAAAACGCAACAGTTCATTTGGAGAAGTATCTATTCTATGTAACATACCTCAACCATATACGGTTCGGGTTTGTGAACTATGTAGGCTTCTGCGGCTTGATAAACAATCACTTACAAACATCCTTGACATATACTTTTATGACGGGAGGAAAATGTTAAACAATCTTCTAGAGGGGAAAGAATCTTTTCGAGGTAAGCAATTGGAGTCAGACATCACATTTCATATCGGAAAGCAAGAAGCTGAACTTGCTTTAAAGGTCAATAATGCAGCCTTTCATGGGGATCTGTATCAGCTAAAAAGTTTGATTCGAGCTGGAGCAGATCCCAACAAGACCGATTATGATGGAAGGTCACCCTTGCATCTTGCTGCATCTAGAGGAGATGAAAATATCACCCTTTTCCTCATTCAGGAAGGTGTAAACGTCAATATTAGAGATAACTTTGGGAACACACCCTTACTTGAAGCTGTTAAAAATGGACATGATCGAGTTGCTTCCTTACTTGTTAAAGAAGGGGCCTCAATGAAAATAGACAATGCTGGTAATTTCCTATGTATAGCTGTTGCTAGGGGCGATTCAGATTATCTTCAAAGGCTCTTATCTAACGGCATGGATCCCAACTCAAAAGATTATGATTACCGAAGCCCCCTTCatgttgctgctgctgaagGTTTATTCTTCATGGCAAAGCTGCTATTAGCAGCCGGAGCTAGTGTTTTCATCAAAGATAGATGGGGAAATACTCCACTTGATGAAGCTCGGATGTCTGGAAATAAGAACCTCATCAAGCTATTGGAAGATGCAAAGTCTGCTCAGTTGTCAGAATTCCCATATGCCTCCACAGAATTCACAGATAAAATGCACCCAAAGAAATGCACAGTGTTCCCTTTCCACCCATGGGATCCAAAAGAACATAGAAGACACGGCATTGTCCAGTGGGTTCCACACACCATTGAAGATCTTATCAAAACAGCAGCAGAGCAGCTAAAACTTTCTAGTGGTGGTTGTATTTTATCTGAAGATGGTGGTAAAATTATCGATGTGGACATGATTAAGGATGGTCAAAAGCTGTATTTAGTCCACGAAACACATTA 2558 0.4054 MVGKKKVKLVEKEEEKRETEKETASSSSSSSSSSSSSSQTSSSDEREYEVQDLRDRIKSSRGSRFDLIENELGLNSTRRKFSRQAVLDGIRVFSEDFVIHPNNRWYRAWTEFILLWAVYSSFFTPLEFGFFRGLPENLFILDIIGQVAFLVDIVLQFFLAYRDSQTYRMVYKRTPIALRYLKSSFIFDFLGCLPWDMIYKACGRREEVRYLLWIRLYRARKVDGFLQRLEKDIRINYMFTRILKLLVVELYCTHTAACIFYYLATTLPASQEGYTWIGSLKLGDYSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLLKYMNRNRLGRDIREQIKGHLRLQYESSYTEAAVLQEIPISIRSKISQTLYLPYIENVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNAVDQLYFVCHGVLEEVGTCEDGSEETVSLLKRNSSFGEVSILCNIPQPYTVRVCELCRLLRLDKQSLTNILDIYFYDGRKMLNNLLEGKESFRGKQLESDITFHIGKQEAELALKVNNAAFHGDLYQLKSLIRAGADPNKTDYDGRSPLHLAASRGDENITLFLIQEGVNVNIRDNFGNTPLLEAVKNGHDRVASLLVKEGASMKIDNAGNFLCIAVARGDSDYLQRLLSNGMDPNSKDYDYRSPLHVAAAEGLFFMAKLLLAAGASVFIKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLSEFPYASTEFTDKMHPKKCTVFPFHPWDPKEHRRHGIVQWVPHTIEDLIKTAAEQLKLSSGGCILSEDGGKIIDVDMIKDGQKLYLVHETH 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02456 852 ProSiteProfiles cAMP/cGMP binding motif profile. 427 547 IPR000595 -
Bva12g02456 852 Gene3D - 669 763 IPR036770 -
Bva12g02456 852 Pfam Cyclic nucleotide-binding domain 447 531 IPR000595 -
Bva12g02456 852 MobiDBLite consensus disorder prediction 1 23 - -
Bva12g02456 852 ProSiteProfiles Ankyrin repeat region circular profile. 700 732 - -
Bva12g02456 852 ProSiteProfiles Ankyrin repeat region circular profile. 636 667 - -
Bva12g02456 852 SUPERFAMILY cAMP-binding domain-like 355 545 IPR018490 -
Bva12g02456 852 Gene3D - 109 353 - -
Bva12g02456 852 ProSiteProfiles KHA domain profile. 779 852 IPR021789 -
Bva12g02456 852 ProSiteProfiles Ankyrin repeat region circular profile. 603 635 - -
Bva12g02456 852 PANTHER POTASSIUM CHANNEL SKOR-LIKE 42 851 - -
Bva12g02456 852 SMART cnmp_10 427 545 IPR000595 -
Bva12g02456 852 SUPERFAMILY Voltage-gated potassium channels 101 352 - -
Bva12g02456 852 Pfam KHA, dimerisation domain of potassium ion channel 778 847 IPR021789 -
Bva12g02456 852 Gene3D Helix hairpin bin 354 410 - -
Bva12g02456 852 SMART ANK_2a 667 696 IPR002110 GO:0005515
Bva12g02456 852 SMART ANK_2a 636 665 IPR002110 GO:0005515
Bva12g02456 852 SMART ANK_2a 603 632 IPR002110 GO:0005515
Bva12g02456 852 SMART ANK_2a 700 729 IPR002110 GO:0005515
Bva12g02456 852 SMART ANK_2a 733 763 IPR002110 GO:0005515
Bva12g02456 852 PANTHER POTASSIUM CHANNEL AKT1 42 851 IPR045319 GO:0005249|GO:0006813
Bva12g02456 852 ProSiteProfiles Ankyrin repeat profile. 700 732 IPR002110 GO:0005515
Bva12g02456 852 Gene3D Jelly Rolls 411 549 IPR014710 -
Bva12g02456 852 CDD CAP_ED 427 541 IPR000595 -
Bva12g02456 852 Gene3D - 560 668 IPR036770 -
Bva12g02456 852 ProSiteProfiles Ankyrin repeat profile. 636 668 IPR002110 GO:0005515
Bva12g02456 852 SUPERFAMILY Ankyrin repeat 576 755 IPR036770 -
Bva12g02456 852 Pfam Ankyrin repeats (3 copies) 578 665 IPR002110 GO:0005515
Bva12g02456 852 Pfam Ankyrin repeats (3 copies) 672 754 IPR002110 GO:0005515
Bva12g02456 852 PRINTS EAG/ELK/ERG potassium channel family signature 142 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva12g02456 852 PRINTS EAG/ELK/ERG potassium channel family signature 251 261 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva12g02456 852 PRINTS EAG/ELK/ERG potassium channel family signature 343 352 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva12g02456 852 PRINTS EAG/ELK/ERG potassium channel family signature 299 316 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva12g02456 852 MobiDBLite consensus disorder prediction 1 49 - -
Bva12g02456 852 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Bva12g02456 852 Coils Coil 2 22 - -
Bva12g02456 852 MobiDBLite consensus disorder prediction 24 44 - -
Bva12g02456 852 Pfam Ion transport protein 107 352 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02456 Bva-Chr12 18511329 18518365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02456 675 753 Ion Channels AT5G37500 34.653 1.68e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02456 K21867 - gmx:100814385 1467.21