Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02444 ATGGGAAGGCAACCGTGTTGTGATAAAGTTGGGTTGAAGAAAGGGCCATGGACTGCAGAAGAGGATAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGTTGCTGGAGAGCTGTCCCCAAGCTAGCAGGGCTCTTGAGGTGTGGGAAGAGTTGCAGGCTGAGATGGACAAATTATCTAAGGCCAGACTTAAAGAGAGGCCTTTTATCAGaatatgaagagaaaatggtCATTGATCTGCATGCTCAACTTGGCAACAGATGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAACGAGATCAAGAACCACTGGAATACccacataaaaaagaaacttaaaaaaatgggCATTGATCCTGTCACCCACAAGCCACTCCGTACTTCAGCTGATCAAACTCAAACCCCACAAAAACAACAACtgcaagaaaaacaacaatctTTGCCTAAGAACTCTAAATCCGAAACCGAAAATGACCAAAACAAAGAGGCAGAGAGCTCATATGAGTCATCAACCATAACCGAAGCCAAAGAGGAAGACAAAATCATGACACCTCCATTTGAAACAATGGAGATCATAAATGATGGGTTCTGCACTGATGAGGTTCCAATCATCGAACCCCACGAGATTCTAATGCCCTGTGCTGATTCATCAACCTCTTCGTCTTCGTCTTCTTCCTCATCCAACTTTCTTCAAGACCTGCAGCTCCCAGATTTTGAGTGGTCGTGTAATTACAGTAGCAGTAATATAATTGGCAGTAACAATTTTAACAATGGCAGTGTGGAGTTGTGGGATTATGAGCTTATTAGCAGTTGGGATTTACTGATTAATGAAGAATTTGATGGTGACAGAAAGCAAGAGTTTGATGCTCCTCTGAATCAGCACCAAAGAATGGTTATGGATCAATCATCTTGGGCATATGGCTTGTTttg 941 0.4028 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLRTSADQTQTPQKQQLQEKQQSLPKNSKSETENDQNKEAESSYESSTITEAKEEDKIMTPPFETMEIINDGFCTDEVPIIEPHEILMPCADSSTSSSSSSSSSNFLQDLQLPDFEWSCNYSSSNIIGSNNFNNGSVELWDYELISSWDLLINEEFDGDRKQEFDAPLNQHQRMVMDQSSWAYGLF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02444 313 SMART sant 66 114 IPR001005 -
Bva12g02444 313 SMART sant 13 63 IPR001005 -
Bva12g02444 313 MobiDBLite consensus disorder prediction 117 190 - -
Bva12g02444 313 CDD SANT 16 61 IPR001005 -
Bva12g02444 313 Gene3D - 71 116 - -
Bva12g02444 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva12g02444 313 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 286 - -
Bva12g02444 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva12g02444 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva12g02444 313 CDD SANT 74 112 IPR001005 -
Bva12g02444 313 Gene3D - 11 67 - -
Bva12g02444 313 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Bva12g02444 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva12g02444 313 MobiDBLite consensus disorder prediction 129 157 - -
Bva12g02444 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva12g02444 313 PANTHER MYB TRANSCRIPTION FACTOR 1 286 - -
Bva12g02444 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02444 Bva-Chr12 18444037 18445821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02444 1 313 MYB Transcription Factor Family AT5G16600 50.143 6.74e-109 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g02444 Myb_DNA-binding 8.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02444 K09422 - gmx:100803624 436.417