Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02440 ATGAGTTCTACCTTGGATATGTCGCTTGATGATAGAATAAAGAACAGGAGTAATAGAGGAAGGGGTAGAGGACGTGGCAGGCCCCAACGTGGCCGTGTACCTGGTAGGAATGTTCCTGGTGGAAGAATGCCTGGTGCAGCTCGTAGAGGTCCTCTTACAGTTAATACTCGGCCATCAGCATATGCAATTGCTAAGTCAATTCGCAGGCCCAGGCCTTTTCCATGGCAGCATGACTTGTTTGAAGATAGCTTAAGAGCTGCAGGGATACAAGGAGTAGAGGTTGGCACAAAGTTGTATGTTTCCAACCTGGACCATGGAGTAACTAATGAAGACATTAGGGAACTTTTCTCCGAGATTGGAGACTTGAAGCGCTACGCAGTTCATTACGACAAGAATGGACGTCCAAGTGGTTCAGCTGAAGTCCTCTACGCCAGAAGAAGTGATGCATTTGCAGCTCTTAAACGATACAATGATGTACTTCTGGATGGAAGGCCCATGAAGATTGAGATTGTTGGTGCCAATGCAGATTTTCCTTTAACTGCTCGTGTGAATGTTACTGGGGTAAATGGGCGCAGGAAGAGGACAGTTGTAATGACGACTGGGGGAGGTCGAGGTGGAGGTCCTCCTATGGTTAATCGCGGTACTGGTCGGGGACGCCGAGGTGTTGGAAGGGGTGGTATTGGGAGTGGTCGAGGTCGTGGCCGTGGCAGTGCAACTCGAGCTAGGGGTCGAGGCCGGGGTCGTGGAAAGAAGGACCCTCTTGACAAGGAGAAACTCGATAAGGACCTTGAGACCTATCACGCTGAGGCCATGAATACCTCGTG 824 0.5024 MSSTLDMSLDDRIKNRSNRGRGRGRGRPQRGRVPGRNVPGGRMPGAARRGPLTVNTRPSAYAIAKSIRRPRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSEIGDLKRYAVHYDKNGRPSGSAEVLYARRSDAFAALKRYNDVLLDGRPMKIEIVGANADFPLTARVNVTGVNGRRKRTVVMTTGGGRGGGPPMVNRGTGRGRRGVGRGGIGSGRGRGRGSATRARGRGRGRGKKDPLDKEKLDKDLETYHAEAMNTS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02440 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Bva12g02440 274 Gene3D - 91 172 IPR012677 -
Bva12g02440 274 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 273 - -
Bva12g02440 274 SMART rrm1_1 97 169 IPR000504 GO:0003723
Bva12g02440 274 MobiDBLite consensus disorder prediction 248 267 - -
Bva12g02440 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Bva12g02440 274 MobiDBLite consensus disorder prediction 197 274 - -
Bva12g02440 274 SUPERFAMILY RNA-binding domain, RBD 19 170 IPR035979 GO:0003676
Bva12g02440 274 SMART FoP_duplication_2 203 274 IPR025715 -
Bva12g02440 274 CDD RRM_THOC4 96 170 - -
Bva12g02440 274 MobiDBLite consensus disorder prediction 1 55 - -
Bva12g02440 274 PANTHER THO COMPLEX SUBUNIT 4C 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02440 Bva-Chr12 18411608 18415595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02440 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 4.52e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02440 K12881 - gmx:100801491 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02440 12 18411608 18415595 Bva12g02440 12 18411608 18415595 ECH