Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02428 ATGTGGGAACAGGATGAACAACCTACAGACGTAGCTTGTGAAAAACTGAGAAAGATATCGTTAATCTGGCTTCTAGCTAGACAGATAGTTTGCTGGGGACCTGAGATGGAGGGGTCGAGCTTAAGAAAAGGTGCATGGACTGTGGAGGAAGATAACCTTCTTAGGTCATGCATTCAAAAATATGGGGAGGGAAAATGGCATTTAGTTCCCCAAAGAGCAGGCTTGAACAGGTGCCGGAAAAGCTGTAGATTGAGGTGGTTGAATTACCTAAGCCCTAACATCAAGAGAGGATGCTTTACAGAAGACGAAGTTGACATGATAATAAGGTTCCACAGCCTCCTCGGAAACAGATGGTCCCTCATTGCTGGAAGACTTCCTGGAAGAACAGCTAATAATGTGAAGAACTATTGGAACACCAATTTGCGCCATAGGATCTCAGAAAAGGTGAACCAGTTGAAAGAGAAGAGTAACGTGACCATGAAAACTCACGAAGTAATAAAGACTAAACCTAGAATCTTCCCCCAAAACTCGCCATGGCTGAGGGGGAAACTACCTATGTTCACAAACGATAACGAGCCCATACAACCTGtttttgcaaaaaattatGGTGTGGGAGAGTGCAGTAGTGCTGCACAATCTATGTTCCCAAATCTGGGAGACTCGTGTCTTCCAGATCCATCACTGCCAGAGAATTGGAGAGGGTTGTTGAAGAGATTTCTGGACGAAGTGATGGCCGACAACAAGGGAAAAAGTGCACACTCTCCAACGGGTCAGAATACGAAGAAAGCTTACGTGGACGACGAAGAACTTGCTGGAATGATGACAGGCCTAGGGGAGGGGGACTATTCCCTTGAAGAACAGGGTTTTTGGAATGACTTGCTCCGTTTGGACGATGCCAACGAATGGAATTTGAATTTCCCTTCTGATTA 929 0.4489 MWEQDEQPTDVACEKLRKISLIWLLARQIVCWGPEMEGSSLRKGAWTVEEDNLLRSCIQKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLSPNIKRGCFTEDEVDMIIRFHSLLGNRWSLIAGRLPGRTANNVKNYWNTNLRHRISEKVNQLKEKSNVTMKTHEVIKTKPRIFPQNSPWLRGKLPMFTNDNEPIQPVFAKNYGVGECSSAAQSMFPNLGDSCLPDPSLPENWRGLLKRFLDEVMADNKGKSAHSPTGQNTKKAYVDDEELAGMMTGLGEGDYSLEEQGFWNDLLRLDDANEWNLNFPSD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02428 309 CDD SANT 99 141 IPR001005 -
Bva12g02428 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 94 IPR017930 -
Bva12g02428 309 Gene3D - 98 169 - -
Bva12g02428 309 Gene3D - 43 95 - -
Bva12g02428 309 SMART sant 42 92 IPR001005 -
Bva12g02428 309 SMART sant 95 143 IPR001005 -
Bva12g02428 309 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 40 177 - -
Bva12g02428 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 145 IPR017930 -
Bva12g02428 309 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 40 177 - -
Bva12g02428 309 CDD SANT 45 90 IPR001005 -
Bva12g02428 309 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Bva12g02428 309 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Bva12g02428 309 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Bva12g02428 309 Pfam Myb-like DNA-binding domain 96 141 IPR001005 -
Bva12g02428 309 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02428 Bva-Chr12 18333809 18335637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02428 41 173 MYB Transcription Factor Family AT1G66370 63.121 6.92e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g02428 Myb_DNA-binding 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02428 - K16166 mtr:MTR_5g078860 215.698