Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02421 ATGGACTGCTCCTCTTCTTGCTCTTCCTCCGAGGGTCATAATAGTCCCGAGGCGAATTTCGAAGCTGATACTGCTCGCACGCCCATCGCCGTCCGTCGAGCTCTCCAGCTCATCCAATCCGACCACCCAGATTCGAAGCTCCAAGCCGCTCGGGATATCCGACGCCTCACCAAGACCTCTAACCGCTGTCGGCGCCAGCTCGCCGAAGCTGTCGGTCCACTCGTTTCCATGATCCGAGTCGACTCGCCCGAGTCACGCGAACCCGTTCTTCTCGCATTGCTTAACCTCGCCGTCAAAGATGAAAAGAATAAAATCAACATTGTGGAAGCTGGTGCGTTGGAGCCCATAATCAGTTTCCTCAAGTCAGAGAATGTAAATCTGCAGGAGTGTGCAACTGCATCTTTGCTCACTCTATCTGCTTCTATAACCAACAAGCCAATCATTGGTTCTGCCGGTGCTATTCCTGCCCTTGTGGAGATCCTTAGAGATGGAACCCCTCAAGCTAAAGCAGATGCAGTAATGGCTCTTTCCAATTTGTCAACACACTCGAACAATCTCAACATCATTCTGGGAACAAATTCAATCCCTTTTATCGTTGATCTGCTTAAAACCTGTAAAAAATCATCAAGAACAGCGGAGAAATGCTGTGCTTTGATAGAATCCTTGGTGGGTTTTGATGAGGGGAGAACTGCCTTGACATCTGAAGAAGGTGGAGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGCACTCTCCAAAGCAGGGAGCATGCCGTTGGAGCACTGCTGGCAATGTGCGAAAGTGACCGTCGTAAATACAGGGAACCGATTCTTAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTCACCGTTCAGGGAACGCCCAAATCTCAGTTGAAAGCAAGAAACCTTCTGCAGTTGCTGAGAGAATCTCCTTATCCAAGATCAGAAATTCAACCCGACACTCTTGAGAATATAGTGTGCAACATCATATCTCAGATAGACGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCCGAGATGGTTCAAGTCAGCATGGAACAGAGTTTGAGACATTTACAGCAGAGAGCTCTTGTTTGCACTCCCAGTGATCTGCCAATTGCTAGCCATGCTTCTGAAGTTCCTTCAAAATG 1157 0.4806 MDCSSSCSSSEGHNSPEANFEADTARTPIAVRRALQLIQSDHPDSKLQAARDIRRLTKTSNRCRRQLAEAVGPLVSMIRVDSPESREPVLLALLNLAVKDEKNKINIVEAGALEPIISFLKSENVNLQECATASLLTLSASITNKPIIGSAGAIPALVEILRDGTPQAKADAVMALSNLSTHSNNLNIILGTNSIPFIVDLLKTCKKSSRTAEKCCALIESLVGFDEGRTALTSEEGGVLAVVEVLENGTLQSREHAVGALLAMCESDRRKYREPILREGVIPGLLELTVQGTPKSQLKARNLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIASHASEVPSK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02421 385 SUPERFAMILY ARM repeat 33 336 IPR016024 -
Bva12g02421 385 Gene3D - 26 223 IPR011989 -
Bva12g02421 385 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 111 153 IPR000225 GO:0005515
Bva12g02421 385 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g02421 385 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 194 IPR000225 GO:0005515
Bva12g02421 385 Gene3D - 224 366 IPR011989 -
Bva12g02421 385 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 368 - -
Bva12g02421 385 Pfam Armadillo/beta-catenin-like repeat 101 135 IPR000225 GO:0005515
Bva12g02421 385 PANTHER U BOX DOMAIN-CONTAINING 12 368 - -
Bva12g02421 385 MobiDBLite consensus disorder prediction 1 23 - -
Bva12g02421 385 SMART arm_5 141 181 IPR000225 GO:0005515
Bva12g02421 385 SMART arm_5 225 266 IPR000225 GO:0005515
Bva12g02421 385 SMART arm_5 182 224 IPR000225 GO:0005515
Bva12g02421 385 SMART arm_5 100 140 IPR000225 GO:0005515
Bva12g02421 385 SMART arm_5 60 98 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02421 Bva-Chr12 18299808 18302972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02421 23 308 U-box Gene Family AT2G23140 33.681 1.51e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02421 - - gmx:100809684 595.119