Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02413 ATGGGTTGCTGCTTCAGTGCTAGAATCAAAGCAGAGAGTCCTCCGCGTAATGGTTCGAGTTCAAATTATGTTTGCAAAGAAGAGGGTCCTTTGAGTGGTTTAAGCAGCAAGGTTTCCATTCCCTCTGTGCCCCCAACTCCACGGACAGAGGGTGAGATCTTGCAGTCTGCAAATTTGAATAGCTTCAGCTTCAGTGAGCTAAAAACAGCTACAAGGAACTTCCGGCCAGATAGTGTGGTGGGTGAAGGTGGCTTTGGTTGTGTATTTAAGGGGTGGATTGATGAGCAGACATTTACTGCTGCTAAACCTGGGACTGGAACTGTCATTGCTGTTAAAAGGCTTAATCAAGAAAGCTTCCAGGGACACAATGAATGGTTGACAGAAATTAATTACCTGGGGCAGCTGCATCATCCCAATCTTGTGAAACTGTTTGGTTACTGCTTAGAGGATGACCACCGGCTTTTGGTGTATGAATTCCTGCCAAAAGGCAGCTTGGATAACCATTTATTTAGGAGGGCTTCTTACTTTCAACCACTTTCTTGGGGTATCCGTATGAAAGTGGCTCTAGATGCTGCTAAAGGTCTTGCGTTTCTTCACAGTGATGAAGCAAAAGTGATATATCGAGACTTCAAAACATCTAATATTTTGCTTGATTCAAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAGGATGGACCAGTAGGTGATAAGAGTCATGTCTCTACTAGGGTAATGGGCACCTATGGCTACGCTGCTCCGGAGTACATGGCCACAGGTCATTTGACCAAGAAGAGTGATGTATACAGTTTTGGAGTTGTTCTCTTAGAAATTATGTCTGGCAAACGTGCCTTGGATAAAAACAGACCATCTGGGGAGCATAATTTAGTTGAATGGGCCAAGCCATACCTTACCAGCAAACGCCGAATCTTCCAAGTTATGGATGCACGTATTGAAGGCCAGTACTCATTGCGTGCTGCAATGAAAGCGGCTAACCTCGCAATTCAATGCCTTTCTGTAGAACCCAGATTTAGACCAAACATGGAAGAGGTGGTAAGAACATTGGAACAGCTTCAGGATTCCAATGACTCGGGGTCAGTGGGAAGCTCTCGAGATCGAACAGCGAGAAAGAGTCACCATAGCTCTGGCTCTGGCTCTAGCTCCGGTCCTAAACATCATAGAAGAACTATCAACGATCCCTTAAATGGAGAAGGTTCTTCTAATCCAAAGCCATCTGCTTCTCCTCTTGTTACATA 1259 0.4464 MGCCFSARIKAESPPRNGSSSNYVCKEEGPLSGLSSKVSIPSVPPTPRTEGEILQSANLNSFSFSELKTATRNFRPDSVVGEGGFGCVFKGWIDEQTFTAAKPGTGTVIAVKRLNQESFQGHNEWLTEINYLGQLHHPNLVKLFGYCLEDDHRLLVYEFLPKGSLDNHLFRRASYFQPLSWGIRMKVALDAAKGLAFLHSDEAKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDKNRPSGEHNLVEWAKPYLTSKRRIFQVMDARIEGQYSLRAAMKAANLAIQCLSVEPRFRPNMEEVVRTLEQLQDSNDSGSVGSSRDRTARKSHHSSGSGSSSGPKHHRRTINDPLNGEGSSNPKPSASPLVT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02413 419 CDD STKc_IRAK 80 359 - -
Bva12g02413 419 SUPERFAMILY Protein kinase-like (PK-like) 47 356 IPR011009 -
Bva12g02413 419 MobiDBLite consensus disorder prediction 29 49 - -
Bva12g02413 419 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02413 419 MobiDBLite consensus disorder prediction 357 419 - -
Bva12g02413 419 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Bva12g02413 419 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Bva12g02413 419 Gene3D Transferase(Phosphotransferase) domain 1 160 382 - -
Bva12g02413 419 MobiDBLite consensus disorder prediction 401 419 - -
Bva12g02413 419 PANTHER KINASE 1B 24 399 - -
Bva12g02413 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Bva12g02413 419 MobiDBLite consensus disorder prediction 35 49 - -
Bva12g02413 419 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Bva12g02413 419 PANTHER OS01G0588500 PROTEIN-RELATED 24 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02413 Bva-Chr12 18252519 18255405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02413 1 356 Glycoside Hydrolase AT3G07070 45.777 5.34e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Bva12g02413 PK_Tyr_Ser-Thr 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02413 - - gmx:100775335 664.455