Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02412 ATGCGGAGGTACAGTCCACCATACTACAGTCCTCCTAGGAGAGGATATGGGCGTGGTGGGAGAAGCCCTCCTAGAAGGGGATATGGTGGAGGTAGGCGAGGGGAACAAAATCATGGAAGCCTTTTGGTTCGAAACATTCCTCTTGATTGCAGACCTGAGGAACTACGAGTTCCCTTTGAGCGGTTTGGTGCTGTCCGAGATGTCTATATACCAAGGGACTTTTACTCAAAGCAACCTCGAGGTTTTGCATTTGTGCAATTTGTGGATCCCTATGATGCCTCAGAGGCGCAGTACCAGATGAATGGAAAGATTTTTGCTGGAAGGGAAATATCTGTTGTTGTTGCTGCAGAATCAAGAAAAAGACCAGAGGAGATGCGTCAAAGGACAAGGGTTAgAGGACCTGGAGGCTATGGGGGGGCCAGGTCATCTTATTATGGACGTTCACGATCACGCTCCCCACATTATCAAACTGGGTCTAGAGGTCGATATCGCTCAAGGTCCTTTTCTCCTGCCCCAAGATGGCAAAATGAATACTCTGTTTCACCTAGAAGGGAACTAGAGCGGCCTAGATCACCAAGAGGTCCTCCTGGTGGTGAGCGAGAAGGTGATCAAAACCACAGGTCATATTCTCCAGCTTATGGCAATGGCAATGGCAGTGATTACCATCATAGCAATGGATACGGGGAGAAATCCATGCACGAGTCTGAGGCTGGGCGAGGCCAGTGGAGGTCATCTCCACGTAGAGCATCAAGGTCACCTATCGGGTCTAGATCAAGGTCTGCTGATTTGTCACCCAGACACGGCAGATA 809 0.4957 MRRYSPPYYSPPRRGYGRGGRSPPRRGYGGGRRGEQNHGSLLVRNIPLDCRPEELRVPFERFGAVRDVYIPRDFYSKQPRGFAFVQFVDPYDASEAQYQMNGKIFAGREISVVVAAESRKRPEEMRQRTRVRGPGGYGGARSSYYGRSRSRSPHYQTGSRGRYRSRSFSPAPRWQNEYSVSPRRELERPRSPRGPPGGEREGDQNHRSYSPAYGNGNGSDYHHSNGYGEKSMHESEAGRGQWRSSPRRASRSPIGSRSRSADLSPRHGR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02412 269 MobiDBLite consensus disorder prediction 1 40 - -
Bva12g02412 269 PANTHER OS02G0252100 PROTEIN 23 265 - -
Bva12g02412 269 MobiDBLite consensus disorder prediction 180 206 - -
Bva12g02412 269 SUPERFAMILY RNA-binding domain, RBD 37 146 IPR035979 GO:0003676
Bva12g02412 269 MobiDBLite consensus disorder prediction 118 269 - -
Bva12g02412 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Bva12g02412 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Bva12g02412 269 MobiDBLite consensus disorder prediction 226 241 - -
Bva12g02412 269 MobiDBLite consensus disorder prediction 208 224 - -
Bva12g02412 269 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 265 - -
Bva12g02412 269 Gene3D - 34 168 IPR012677 -
Bva12g02412 269 SMART rrm1_1 40 113 IPR000504 GO:0003723
Bva12g02412 269 MobiDBLite consensus disorder prediction 145 176 - -
Bva12g02412 269 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02412 Bva-Chr12 18247582 18251259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02412 15 102 Eukaryotic Initiation Factors Gene Family AT3G11400 34.737 2.06e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02412 K12900 - gmx:100804294 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02412 12 18247582 18251259 Bva12g02412 12 18247582 18251259 ECH