Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02409 ATGGCTTTGGTTAGCATTGTCGGCATTGCTTCTCTCTTGGTATTTCTCACAGCCACCGATGCCAGAATATCGGGTGTCTACACCGGCGGGGCATGGCAGAGCGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCAGGAACAATGGGAGGGGCCTGTGGCTATGGAAACTTATACAGCCAAGGCTATGGCGTTGATACTGCAGCTCTGAGCACTGCTCTATTCAACAATGGGTTTAGCTGTGGATCTTGCTTTGAGATCAAGTGCGCTAATGATCCACAATGGTGCCACTCCGGCAGCCCTTCCATCTTCGTCACCGCCACCAACTTTTGCCCCCCGAACTATGCTCAACCCAGCGACAATGGCGGCTGGTGCAACCCTCCTAGGCCACACTTTGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAGTACCGTGCCGGCATCGTCCCCGTCTCTTACCGCCGGGTGCCGTGTCGGAAAAGAGGAGGGATCAGGTTCACGATCAACGGGTTCCGTTACTTCAACTTGGTTTTGATAACCAACGTGGCGGGCGCAGGAGATGTGGAGAAGGTGAGCGTGAAAGGGTCAAAGAGTGGGTGGATGAGCATGAGCCGGAACTGGGGGCAGAACTGGCAGTCAAACGCGGTTTTGGTCGGACAGTCACTGTCGTTTAGGGTGACGGGCAGTGACCGACGCACTTCCACCTCGTGGAACATAGTTCCGGCAAATTGGCAATTCGGACAAACTTTCACGGGAAAAAATTTCAGGGTGtg 776 0.5503 MALVSIVGIASLLVFLTATDARISGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVDTAALSTALFNNGFSCGSCFEIKCANDPQWCHSGSPSIFVTATNFCPPNYAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLITNVAGAGDVEKVSVKGSKSGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFTGKNFRV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02409 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Bva12g02409 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Bva12g02409 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Bva12g02409 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Bva12g02409 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Bva12g02409 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Bva12g02409 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Bva12g02409 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Bva12g02409 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Bva12g02409 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Bva12g02409 258 PANTHER EXPANSIN-A4 7 257 - -
Bva12g02409 258 SMART dpbb_1 67 154 IPR007112 -
Bva12g02409 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Bva12g02409 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Bva12g02409 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Bva12g02409 258 PANTHER EXPANSIN-A15 7 257 IPR002963 GO:0009664
Bva12g02409 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Bva12g02409 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Bva12g02409 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Bva12g02409 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Bva12g02409 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Bva12g02409 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Bva12g02409 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Bva12g02409 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Bva12g02409 258 Gene3D - 164 256 IPR036749 -
Bva12g02409 258 Gene3D - 18 160 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02409 Bva-Chr12 18230183 18232078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02409 4 258 Expansin Gene Family AT2G39700 83.529 4.56e-167 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02409 - - rcu:8261656 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01369 02 17363664 17365945 Bva12g02409 12 18230183 18232078 ECH
Bva01g00503 01 3933603 3936310 Bva12g02409 12 18230183 18232078 ECH
Bva09g00130 09 603259 605684 Bva12g02409 12 18230183 18232078 ECH
Bva07g02516 07 20111578 20114156 Bva12g02409 12 18230183 18232078 ECH
Bva12g02409 12 18230183 18232078 Bva12g02409 12 18230183 18232078 ECH