Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02402 ATGAGTTTTGTTTTTCGAGGGACAAGAGCAGATATAGAAACTGGATTTCCAGGATTTATACCTGAGAGGCGTGCACTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAATTACCTCACTTTTCTTGTCACAGTTCTCCTGCTATTCATGATATTAAACTCTCACCAGATGTCaccaaattttctgcTATGGCTGGTGCTTGGTGTCTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGTGCAGGCCCAAGCTCATGCTGCTGCAGCCAGTGGCCTTCTTGGCCACACTGAACTGCGGTTGCATATGCCACCATCCATAGCACTTGCAACCCGAGGGCGTCTCCAAGGCCTAAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGACCTAGATTATGAAACATTAAGAGCCCTGGATTCCGATAATGTTCCTACTGCACCTTCAATGACTGAGGAAGAGATAAATGCTCTGCCTGTCCACAAATACAAGGTTTCCGTTCCCCAAAACAGTGGTTCCGTGTTGCAACAACCTTCATCTTCCACATCTGCTGAGAAGAAGCAAGATACTTCCAGTGCAGTTGGTAGTATGAAAGCATCAGGCTCAGATGATGAGCTGACTTGCAGTGTCTGTTTGGAGCAAGTTAATGTTGGAGATTTACTTCGTAGCTTGCCCTGCTTGCATCAGTTTCACGCTAATTGCATTGATCCCTGGCTACGGCAACAAGGAACATGCCCTGTCTGTAAATTCAGAGCAGTGTCTGGATGGCATGAAGGTGGGCAAAATGATATGGATGCTTCCGACATGGTTTG 833 0.4562 MSFVFRGTRADIETGFPGFIPERRALRVHAARPSNSNYLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQVQAQAHAAAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTAPSMTEEEINALPVHKYKVSVPQNGSVLQQPSSSTSAEKKQDTSSAVGSMKASGSDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWHEGGQNDMDASDMV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02402 276 PANTHER TARGET OF ERK KINASE MPK-1 1 276 - -
Bva12g02402 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 260 IPR013083 -
Bva12g02402 276 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Bva12g02402 276 SUPERFAMILY RING/U-box 209 258 - -
Bva12g02402 276 MobiDBLite consensus disorder prediction 178 204 - -
Bva12g02402 276 MobiDBLite consensus disorder prediction 178 209 - -
Bva12g02402 276 Pfam Ring finger domain 213 255 IPR001841 -
Bva12g02402 276 CDD RING-H2_PA-TM-RING 213 255 - -
Bva12g02402 276 SMART ring_2 214 254 IPR001841 -
Bva12g02402 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02402 Bva-Chr12 18167432 18172070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02402 1 276 C3H Transcription Factor Family AT3G55530 77.698 2.01e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02402 K16283 - gmx:100777936 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02402 12 18167432 18172070 Bva12g02402 12 18167432 18172070 ECH