Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02401 ATGTCTGCGGGGACATCTTCGTATTGGTGTTACCGGTGCAGTCGATTCGTGAGGGAATGGAGGCAGGACTTGGTGGTTTGCCCGGACTGCGAGAGTGGATTCGTTGAAGAGATCGAGCATCCAGCGCGGTCTGTGCCCGTGGTTCCGGGGCGGCGGAGGTTTCCGGCTGCGGCTATGTATATGATCGGCCACCGTCCCACTTCCGATCAGAATTCGCGCCCTGCACTACGGAGGACCCGCAGAAACGGTGGTGACCGTTCCACTTTCAATCCTGTCATCGTGCTCCGTGGATCTTCTGATGGGGCGGGTCATGAGGGCGGAGAAGGTCGGGGGTTTGAGCTTTATTACGACGACGGTGCCGGTTCCGGGCTTAGACCCTTGCCTCCAAGCATGTCGGAATTTCTGTTGGGATCTGGTTTTGATAGGCTTTTGGAGCAGCTTTCCCAGATTGAAATTAATGGTATTGGGCGATACGAGCACCCTCCAGCATCAAAAGGAGCGATTGAGTCATTGCCCACGATTGAGATTGACGATACCCATCTAGCTACGGAATCACACTGTGCAGTTTGCAAAGAAGCTTTTGAGTTAGGCACTGCAGCTCGGAAAATGCCTTGTAAGCATATTTACCACCCAGGATGTATTCTACCATGGCTTGCTCTTCGCAATTCCTGCCCTGTTTGCCGCCATGAATTGCCAGCTGACACGCAGAGTCCGCCGGCAGCAGGGCCATCCCTTACTTGGAACGATGAAGAAAATGTGGGATTGACAATTTGGAGGCTTCCGGGCGGTGGGTTCGCAGTGGGAAGGTTTTCTGGTGGAAGAAGGGGTGTTGAAAGGGAGCTACCCGTTGTTTACACAGAAATGGATGGTGGGTTTAACAATGGTGGTGAACCAAGGAGGATTTCGTGGTCGTCTAGTGGGGATAGAGGGAGGCAGAGTGGTGGTGGATTGCGTAGAATGTTTCGAAATCTGTTGGGCTGCTTCAGAAGAGGAGTTCGATCTCAGCCTTCTACTTCTAGTGCAGAAGCTAGAGCCGTAAGGAGGAATTCATCTCATCATCTCAATAGAACCTCTTCACGTGCACGCAGGACTTGGTCTATGGATGTTAACAGTGGAATGAGGGTTTGGTA 1130 0.5248 MSAGTSSYWCYRCSRFVREWRQDLVVCPDCESGFVEEIEHPARSVPVVPGRRRFPAAAMYMIGHRPTSDQNSRPALRRTRRNGGDRSTFNPVIVLRGSSDGAGHEGGEGRGFELYYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKGAIESLPTIEIDDTHLATESHCAVCKEAFELGTAARKMPCKHIYHPGCILPWLALRNSCPVCRHELPADTQSPPAAGPSLTWNDEENVGLTIWRLPGGGFAVGRFSGGRRGVERELPVVYTEMDGGFNNGGEPRRISWSSSGDRGRQSGGGLRRMFRNLLGCFRRGVRSQPSTSSAEARAVRRNSSHHLNRTSSRARRTWSMDVNSGMRVW 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02401 376 MobiDBLite consensus disorder prediction 296 316 - -
Bva12g02401 376 CDD RING-H2_RNF126_like 187 228 - -
Bva12g02401 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Bva12g02401 376 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Bva12g02401 376 Pfam Protein of unknown function (DUF1117) 253 361 IPR010543 -
Bva12g02401 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 325 - -
Bva12g02401 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 325 - -
Bva12g02401 376 SUPERFAMILY RING/U-box 167 238 - -
Bva12g02401 376 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Bva12g02401 376 MobiDBLite consensus disorder prediction 64 106 - -
Bva12g02401 376 Pfam Ring finger domain 186 228 IPR001841 -
Bva12g02401 376 SMART ring_2 187 227 IPR001841 -
Bva12g02401 376 MobiDBLite consensus disorder prediction 332 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02401 Bva-Chr12 18164413 18166336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02401 124 236 C3H Transcription Factor Family AT5G01980 41.593 7.06e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02401 - K11982 gmx:100807324 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01397 02 17517953 17519714 Bva12g02401 12 18164413 18166336 ECH
Bva01g00514 01 4006447 4008069 Bva12g02401 12 18164413 18166336 ECH
Bva12g02401 12 18164413 18166336 Bva12g02401 12 18164413 18166336 ECH