Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02396 ATGGCAAAGACACTCATACTTGTCTGGGTTTTCCTTTTGGCTTTAATCCCTGTAAAATCTCAGCAAGACGAGCTGTTCTTCAATGGGTTTGACGGCGTTGGCACCAACATAAGCTTAAATGGAGGTGCAGAGATAGAGAACAATGGCATACTTCGCCTCACAAATGACACGCTTAGAGTAATTGGGCATGCATTTTATTCATCTCCAATCCAATTCAAGAACTTCACAGATGGTAAAGTTCCATCCTTTTCGACCGCTTTCGCTTTTGCTACAGTCCCTGAATACCCAAAACTAGGTGGCCATGGCTTGGCTTTTACCATTTCTCTTTCCAAAGAGCTTCCTGGTGCTCTTCCAAGCCAGTACCTTGGCCTTCTCAATTCGAGCGATGTTGGCAATTTCTCGAACCATCTATTTGCTGTAGAGTTCGACACCGTCCAAGACTTCGAATTCGGTGACATCAATGATAACCATGTGGGTGTCAACCTTAATAGCTTAACGTCAAACAAATCTGTTCCTGCTGCGTATTTTACAGATGGTTCAACAAAGCAAGACCTTAATTTGAAGAGCGGTAAGGTGATTCAGGCATGGATTGACTATGATTCCAACAAGAATCAATTGGATGTTAGACTCTCTCCAAATTCTTCAAAACCCAGCTCTCCAATTTTGTCCTTTCAAGTGGATCTCTCGCCAATTCTAAGAGAGTCTATGTATGTtgggttttcttcttcaactggGTTACTTGCAAGCTGGCACTATCTTCTGGGCTGGAGCTTCAAAATAAATGGAGAGGCAAAATCTCTGTATTTGGAAACGCTTCCTTATCTGCCCGGGCATAAGAAGAGTGAGACTCCCTTAATAATGGGACTCTCTATTGTTGctgtttttctaataattcTGGCAATTGGGTTAGCATTTTATCTCATCAGAAAGACACGGAATGGTGATTTTGTTGAAGCTTGGGAGCTCGAAGTTGGTCCCCACAGATTTGCATATCATGAGCTGAAGAAAGCGACGAGGGGCTTCAGAGACAAACAGCTCCTTGGGTTTGGTGGGTTTGGTCGAGTTTACGAAGGGGTGCTGCCAAATTCCAACACCCAAGTCGCTGTGAAGCGGATTTCTCATGAATCAAAACAGGGACTCCGAGAATTCGTGTCAGAAATTGCAACCATTGGTCGGCTTCGTCACAGAAACCTCGTACAGTTACTAGGTTGGTGCCGTAGACGCGGTGATCTACTACTTGTGTATGATTTCATGCCCAATGGGAGCTTGGACAAATACCTATTCGATGAACCGAAAGCAATTCTGAGCTGGGAACAGAGGTTCAAGATCATAAAAGGGGTGGCTTCAGGTATTGTCTATCTGCATGAAGAATGGGAACAAACTGTGATTCATAGAGACATAAAAGCAGGGAATGTTCTATTGGATTCAGAAATGAATGGTAGACTTGGTGATTTTGGTTTAGCTAAGCTTTATGAGCACGGGACGAATCCAAGCACGACCCGGGTAGTGGGCACGCTGGGTTACTTGGCGCCAGAGCTGACGCGCACAGGGAAACCCACGACTAGCTCTGACGTTTATGCATTTGGCGCTCTCTTGTTAGAAGTGGTGTGTGGAAGAAGACCCATTGAGCCCAAGGCATTGCCGGAGGAGCTCATATTGGTGGACTGGGTTTGGGATCGCTGGCGTGTCGGGGCAATATTGGACGTGGCGGACCCGAAATTGGGTCACCACTTTGATGAGCTAAAAGCTGTGGTGGTGCTCAAATTGGGTTTGATGTGTTCGAATAATGCGCCCGAAGCACGACCTAGTATGAGGCAGGTCGTGAGTTACTTGAAGGAGGAGCTGCCGCTGCCGGAGGTAGTGCCGGCGCCCGATGAATTCGATGTGAAAAAGGGTGGTGGAGCTGGCGGCGGTGAAATTGAGAATTTTGTACATTTATATCCGAGGTCATCATATTTTGATAGGGCGAGTACGTGTTCGTCGGCCGGCTATGAGAGGGAGGCCGGCTCTGCTTCGCTTCTTGCCTTTGCGAGTAGACGTGAAGAAGGTAGGTA 2054 0.4586 MAKTLILVWVFLLALIPVKSQQDELFFNGFDGVGTNISLNGGAEIENNGILRLTNDTLRVIGHAFYSSPIQFKNFTDGKVPSFSTAFAFATVPEYPKLGGHGLAFTISLSKELPGALPSQYLGLLNSSDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGVNLNSLTSNKSVPAAYFTDGSTKQDLNLKSGKVIQAWIDYDSNKNQLDVRLSPNSSKPSSPILSFQVDLSPILRESMYVGFSSSTGLLASWHYLLGWSFKINGEAKSLYLETLPYLPGHKKSETPLIMGLSIVAVFLIILAIGLAFYLIRKTRNGDFVEAWELEVGPHRFAYHELKKATRGFRDKQLLGFGGFGRVYEGVLPNSNTQVAVKRISHESKQGLREFVSEIATIGRLRHRNLVQLLGWCRRRGDLLLVYDFMPNGSLDKYLFDEPKAILSWEQRFKIIKGVASGIVYLHEEWEQTVIHRDIKAGNVLLDSEMNGRLGDFGLAKLYEHGTNPSTTRVVGTLGYLAPELTRTGKPTTSSDVYAFGALLLEVVCGRRPIEPKALPEELILVDWVWDRWRVGAILDVADPKLGHHFDELKAVVVLKLGLMCSNNAPEARPSMRQVVSYLKEELPLPEVVPAPDEFDVKKGGGAGGGEIENFVHLYPRSSYFDRASTCSSAGYEREAGSASLLAFASRREEGR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02396 684 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Bva12g02396 684 Gene3D Transferase(Phosphotransferase) domain 1 418 624 - -
Bva12g02396 684 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Bva12g02396 684 Gene3D - 24 261 - -
Bva12g02396 684 CDD lectin_legume_LecRK_Arcelin_ConA 27 262 IPR001220 GO:0030246
Bva12g02396 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 277 IPR013320 -
Bva12g02396 684 SUPERFAMILY Protein kinase-like (PK-like) 323 624 IPR011009 -
Bva12g02396 684 PANTHER - 3 672 - -
Bva12g02396 684 Pfam Legume lectin domain 25 267 IPR001220 GO:0030246
Bva12g02396 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Bva12g02396 684 CDD STKc_IRAK 347 613 - -
Bva12g02396 684 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 3 672 - -
Bva12g02396 684 Pfam Protein kinase domain 342 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02396 684 SMART serkin_6 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g02396 684 ProSiteProfiles Protein kinase domain profile. 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02396 Bva-Chr12 18134375 18136808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02396 18 644 Receptor kinase-like Gene Family AT3G55550 64.062 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Bva12g02396 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02396 - - jre:108986380 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01411 02 17578672 17581112 Bva12g02396 12 18134375 18136808 ECH
Bva01g00522 01 4032437 4034867 Bva12g02396 12 18134375 18136808 ECH
Bva12g02396 12 18134375 18136808 Bva12g02396 12 18134375 18136808 ECH