Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02393 ATGGCGAATCGGTGGTGGGCTGGAAATGTGACAATGAGATCAACAGACCCTATGTCATCTTCTCCATCACTTCAGCTGAGGAACCCAGAAGATGACCATGGTGGATTGAATCGACTTGGGCAAAGACGAGAGCAAGAATTCATGGACAACAGCAATAACAACGCCAACACCACCCCAACTAATAGCAGCAACAGCAACACTAATCCAAACACCAACACCACTTCGCAGAGCCAAAACGCTGAAGATGATGACAGCAGAGACAACGAGCGTGAAGGTGACGACCAGAACCCAGGTAGCCACGACGTGGTTGAGCCTGGTAGCAGCGGTCGCAGGCCCCGAGGCCGCCCACCTGGATCCAGGAACAAGCCAAAACCACCCATCGTTATAACCAAGGAGAGCCCCAACGCGCTTCGAAGCCATGTCTTGGAAATCAGCAGCGGCAGTGACGTCACTGAGAGCATTGCAACCTTTGCTAATCGCAGGCATCGGGGTGTATCGGTGCTTAGTGGAAGTGGCATTGTAACCAATGTCACTCTTCGGCAACCGGCTGCGCCTGGTGGTGTTATCACACTTCATGGAAGGTTCGAGATATTGTCTCTATCTGGTGCCTTTCTGCCTGCTCCTTCGCCACCTGGTGCCACTGGGTTAACAGTGTATTTAGCTGGTGGACAAGGGCAGGTTGTTGGTGGAACTGTGGTCGGTTCCCTGGTGGCTTCTGGGCCTGTGATGATCATTGCAGCTACATTTGCTAATGCTACTTATGAAAGGTTGCCACTTGAGGATGAACCAGCTGGGGAGGGAATGCAAGTGCAGCAACAATCAGGGGTGAATTCAGGAAATACTGGGACCTCAGTATCTCAAGGTTTGGGTGAACAAGTTTCAATGCCCATGTATAATTTACCTCCAAATTTGCTACCAAATGGTCAAATGCCTCATGATATATTCTGGGCTCCCCCACCTCGCCCTCCCCCCTCTTATTG 980 0.5133 MANRWWAGNVTMRSTDPMSSSPSLQLRNPEDDHGGLNRLGQRREQEFMDNSNNNANTTPTNSSNSNTNPNTNTTSQSQNAEDDDSRDNEREGDDQNPGSHDVVEPGSSGRRPRGRPPGSRNKPKPPIVITKESPNALRSHVLEISSGSDVTESIATFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGVITLHGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGTVVGSLVASGPVMIIAATFANATYERLPLEDEPAGEGMQVQQQSGVNSGNTGTSVSQGLGEQVSMPMYNLPPNLLPNGQMPHDIFWAPPPRPPPSY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02393 326 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 250 IPR005175 -
Bva12g02393 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 326 IPR014476 GO:0003680
Bva12g02393 326 MobiDBLite consensus disorder prediction 263 287 - -
Bva12g02393 326 ProSiteProfiles PPC domain profile profile. 134 272 IPR005175 -
Bva12g02393 326 MobiDBLite consensus disorder prediction 1 134 - -
Bva12g02393 326 MobiDBLite consensus disorder prediction 8 27 - -
Bva12g02393 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 326 - -
Bva12g02393 326 MobiDBLite consensus disorder prediction 31 45 - -
Bva12g02393 326 MobiDBLite consensus disorder prediction 46 79 - -
Bva12g02393 326 MobiDBLite consensus disorder prediction 80 98 - -
Bva12g02393 326 MobiDBLite consensus disorder prediction 267 287 - -
Bva12g02393 326 CDD DUF296 138 221 IPR005175 -
Bva12g02393 326 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 262 - -
Bva12g02393 326 Gene3D - 137 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02393 Bva-Chr12 18117662 18120361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02393 1 326 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 52.199 1.12e-78 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02393 - - qsu:112039774 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02393 12 18117662 18120361 Bva12g02393 12 18117662 18120361 ECH