Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02384 ATGGAGGAATCTCAGTACTTGATGTGGGTGAACAGAAAACAAATGTTGAAGTCACATCTTCAAGTACCAATTAGAGGTTACAATAACTCATGGGAAGAAAGGGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCTTACTCTTGCAGTTTCTGTAAAAGGGAATTCAGGTCTGCTCAAGCTCTAGGAGGCCACATGAATGTCCACAGAAGGGATAGAGCTAGGCTCAAGCAAAGCCTTAGCACCCATAATGATGCCCTTCATCACAAGAGTGCTCAATTTTCAGCAGAGATCTGCTCCCAGCTAGATTCTTGTCTTAATACTAATTCTGCTTCTGCTGGCAGCATCACAACTAGTAGTCTTTCAGCTTTAGCAACTCATGAAAAAAGTGGTCATCAAATTGTTTCTCCTTATTCTTCCATCTTTAGCTGGGGACAACACAAGAGGCCTCCCTGTACTTCATCTTTAAAGTTAGATTCTGCTGGAGAGAAACTCATGTGCATCCCAGATTCAGAAGGAGAAGAGGCGATCATTGCGAGGGAAGAAGATTTTAAAGGCTTAGCTTGGAATAATGATGTAGAAACAAATCTATCTGTGGGATTGAGTTCCCTGTTTGGCCAAAAATTACCAAGTGGCTCATGTGGGGATGAAGCAATGATTAGTTGTAAAAGAGCCAAGACTGCTGTTTCTTCACTACCTGTCTTCCTCAAGCCATATACAAATGATATATGCCTAGATTTGCAATCTGCAGAATTTGTACGTGGACTTCAGCCTGGTATGGAAGACTTGGATCTTGAACTCAGACTTGGGAAAACACACAAAGTTAATTA 851 0.4195 MEESQYLMWVNRKQMLKSHLQVPIRGYNNSWEERAFAEDAARILGGCIWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKQSLSTHNDALHHKSAQFSAEICSQLDSCLNTNSASAGSITTSSLSALATHEKSGHQIVSPYSSIFSWGQHKRPPCTSSLKLDSAGEKLMCIPDSEGEEAIIAREEDFKGLAWNNDVETNLSVGLSSLFGQKLPSGSCGDEAMISCKRAKTAVSSLPVFLKPYTNDICLDLQSAEFVRGLQPGMEDLDLELRLGKTHKVN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02384 283 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Bva12g02384 283 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
Bva12g02384 283 SMART c2h2final6 54 76 IPR013087 -
Bva12g02384 283 Pfam C2H2-type zinc finger 54 78 - -
Bva12g02384 283 PANTHER OS07G0101800 PROTEIN 1 282 - -
Bva12g02384 283 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 282 - -
Bva12g02384 283 Gene3D Classic Zinc Finger 51 109 - -
Bva12g02384 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02384 Bva-Chr12 18065192 18066043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02384 32 283 C2H2 Transcription Factor Family AT5G06070 35.135 1.59e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g02384 zf-C2H2_6 1.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02384 - - aprc:113851273 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g01418 02 17623853 17624791 Bva12g02384 12 18065192 18066043 ECH
Bva01g00526 01 4061594 4062499 Bva12g02384 12 18065192 18066043 ECH
Bva12g02384 12 18065192 18066043 Bva12g02384 12 18065192 18066043 ECH