Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02364 ATGGCAAGCTTAGGCAACCCTTCATGCCGTCTTTTCCATCAACACTGGCGAGGAACAGGTGATTTCTCTGCGACTTTGAAGGCATATAATAACGAGGAGAAAATCGAAGAAGAGGAGACGAAATCAACGGCACAGAAGAGCAGATTGAAGAAGGCAAACACAGACGCCGTCAATGGCGGAAACCTCCAAGCACGACAAACCTCCTGCATCGCATAATACCAGAGCGAAGGCAAAGCCACAGAATCAGCTTTCaacccttttctttctctttgcaaTACTGGTATCATGGTGATATCCTTGTTAAAGTTTCTTGTTAATGGCATATCTTCATATTTGCATTTACCATATTCTGGGAATGTGAATTCAGAACCCGTCTCAAAGTATTACAAGAAGGCAGAGGAGATATTTAAGCTGATTAAGCCTATCATTGATGCGATTGATAATTCTGATTTAGCTTCTGAGGAAGTGCTTACTACTATAATTGAAGAACTGGGTCAGGCTGTCGAAGAGTTGAGGGAGCTTATAGAGAACTGGCACCTATTGTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAGACCTTAATATCTAGGATTCGGACTTCAGCACTCAAAATGTTTCAGAAGCTGAAGGATTTCCATCAGCTCCTCCCTGATGAATTGAGCTCTTTAGATCTTGAGCACTATGTGCAGAAACTCAAGCATTTTGGGCATGAAGAAACATCATCAGTCATTAAAGAAGCTATTAGGGAACAACTGGAAGGTGCGGGGCCTAGTTTGGATGTCCTGGCAAAACTTGCAGACTTTCTGGGGCTGAGGTCCAACCAGGAGGTTCTTATTGAGGCTGTGGCCCTTGAAAAGTTGAAGGAGAATGCAGAACAAGCTGAAAAGACTGCTGAAGCTGAATATATTGATCAAATGATTGCTCTTGTAACTCGTATGTATGAGCGTCTTGTTATGCTTAAACAAGAAGAGAGCAGTAGTCCAGTGCCCGTGCCTCCTGATTTTTGCTGTCCTCTCTCGTTGGAGTTGATGACAGATCCAGTCATTGTGGCATCAGGGCAAACCTATGAGCGTGCTTTTATTAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAAACTCTGGCTCACACCAATTTAATACCTAACTACACTGTAAAGGCTCTAATTGCAAACTGGTGTGAATCAAACAATGTCAAGCCAGTTGATACCATAAAACCTATGAACTTAAGCCAAGCATCTTCCATTCATGGCTATGTGGAATCTGGTGTAATTAGGGAATCACCAGTTTTTGTTCATTCCAGGGTCAACCAACCATCCTCACCTGAAGCAGCTCGCTCTCATTCTTTCAGTTCACCGGGTAAGAACCAAACATCTTCTGGTGGAATTCACCGAGAGGGCACATCACCATTGCATCCCCGTTCAACATCTGAAGGTTCCTTAAGTGTTTTGGCTAATGGGCCAAGTTCGGATATTGCAGGAATATCATTGACACGTTCTGATGACAGGTCTGTTAGCTCAGATGAAAAGCATGTCGATTCAGTTGGTCAACCCTCAATGTCACCACCTAGAAGGGAATCTTCCAACTCAGAACAGTCTGAGACCCATGTAAGAACTGCTTCCAATTCCAATTCACTTTCTAATGGCAATATTCCTCAAGGAACAGAGGGAGATGGAAACAGTGCTTCTCAGCTGTCAATAGATCCAGGCTATGATAGAGATTCTTCTGGGGAAGTAAATCCAGGGTCAGAGGCTGCTGTTACTGCCAGCACAACTGCTCCACAAAGAGAACCTGAGGTCTCACCCCGATTTTTAGAAAGTAGAACTCGAAGCCAGTCTATATGGCGGCGGCCAtctgagagatttggtcctaggaTGGTGTCTTCTCCTGCTATTGAGACAAGAGCTGATCTTTCTGCTATTGAGGCCCAGGTTCGGAAGTTAGTTGAGGAGTTGAAAAACCCTTCTCTTGATGCTCAAAGAGATGCAACAGCAGAGCTCCGACTTCTTGCTAAGCACAATATGGATAATCGGATTGTGATTGCAAACTGTGGAGCTATTAGCTTATTAGTTGAGTTTCTCCAATCAAATGATACTAGGATCCAGGAAAATGCTGTTACAGCACTTCTCAACTTatcaattaatgataataataaaactgcAATTGCAAATGCTGGTGCAATTGAGCCTTTAATCCATGTCCTTGAGACAGGGAGCCCAGAAGCTAAGGAAAATTCAGCTGCCACTCTTTTTAGTTTATCGGTGATGGAGGAAAACAAGATCAGGATAGGGAGGTCTGGAGCAATTAGGCCACTAGTTGATTTATTAGGGAATGGAACACCTAGGGGGAAGAAAGATGCTGCCACtgctttgtttaatttgtcaatttttcatgaaaacaAGGGTCGTATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTGATGGACCCAGCAGCTGGAATGGTAGACAAGGCAGTAGCTGTTTTAGCAAATCTTGCAACAATTCCGGAAGGAAGGTCTGCAATTGGTGCGGAAGGTGGGATCCCAGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCAAGAGGAAAGGAGAATGCAGCAGCTGCGCTTCTGCATCTTTGTTCAAACAGTAGCCGATTTTTAAGCATGGTGCTCCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCCCAATCAGGCACCCCAAGGGCCAAAGAAAAGGCGCAGGCACTCCTTAACTACTTTAGAAGTCAAAGACATGGTAATGCTGGGAGGGGCTG 2798 0.4299 MASLGNPSCRLFHQHWRGTGDFSATLKAYNNEEKIEEEETKSTAQKSRLKKANTDAVNGGNLQARQTSCIAYQSEGKATESAFNPFLSLCNTGIMVISLLKFLVNGISSYLHLPYSGNVNSEPVSKYYKKAEEIFKLIKPIIDAIDNSDLASEEVLTTIIEELGQAVEELRELIENWHLLSSKVYFVMQVETLISRIRTSALKMFQKLKDFHQLLPDELSSLDLEHYVQKLKHFGHEETSSVIKEAIREQLEGAGPSLDVLAKLADFLGLRSNQEVLIEAVALEKLKENAEQAEKTAEAEYIDQMIALVTRMYERLVMLKQEESSSPVPVPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPVDTIKPMNLSQASSIHGYVESGVIRESPVFVHSRVNQPSSPEAARSHSFSSPGKNQTSSGGIHREGTSPLHPRSTSEGSLSVLANGPSSDIAGISLTRSDDRSVSSDEKHVDSVGQPSMSPPRRESSNSEQSETHVRTASNSNSLSNGNIPQGTEGDGNSASQLSIDPGYDRDSSGEVNPGSEAAVTASTTAPQREPEVSPRFLESRTRSQSIWRRPSERFGPRMVSSPAIETRADLSAIEAQVRKLVEELKNPSLDAQRDATAELRLLAKHNMDNRIVIANCGAISLLVEFLQSNDTRIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVMEENKIRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKGRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGAEGGIPVLVEVVELGSARGKENAAAALLHLCSNSSRFLSMVLQEGAVPPLVALSQSGTPRAKEKAQALLNYFRSQRHGNAGRG 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02364 931 MobiDBLite consensus disorder prediction 438 626 - -
Bva12g02364 931 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 811 852 IPR000225 GO:0005515
Bva12g02364 931 MobiDBLite consensus disorder prediction 438 504 - -
Bva12g02364 931 MobiDBLite consensus disorder prediction 584 600 - -
Bva12g02364 931 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 729 771 IPR000225 GO:0005515
Bva12g02364 931 Coils Coil 634 654 - -
Bva12g02364 931 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 101 927 - -
Bva12g02364 931 Coils Coil 273 303 - -
Bva12g02364 931 Coils Coil 156 180 - -
Bva12g02364 931 SMART arm_5 631 675 IPR000225 GO:0005515
Bva12g02364 931 SMART arm_5 840 880 IPR000225 GO:0005515
Bva12g02364 931 SMART arm_5 718 758 IPR000225 GO:0005515
Bva12g02364 931 SMART arm_5 677 717 IPR000225 GO:0005515
Bva12g02364 931 SMART arm_5 800 839 IPR000225 GO:0005515
Bva12g02364 931 SMART arm_5 759 799 IPR000225 GO:0005515
Bva12g02364 931 SMART Ubox_2 333 396 IPR003613 GO:0004842|GO:0016567
Bva12g02364 931 MobiDBLite consensus disorder prediction 33 52 - -
Bva12g02364 931 PANTHER U BOX DOMAIN-CONTAINING 101 927 - -
Bva12g02364 931 SUPERFAMILY RING/U-box 317 406 - -
Bva12g02364 931 MobiDBLite consensus disorder prediction 33 48 - -
Bva12g02364 931 Pfam U-box domain 330 400 IPR003613 GO:0004842|GO:0016567
Bva12g02364 931 CDD RING-Ubox_PUB 334 376 IPR045210 -
Bva12g02364 931 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 770 812 IPR000225 GO:0005515
Bva12g02364 931 ProSiteProfiles U-box domain profile. 329 403 IPR003613 GO:0004842|GO:0016567
Bva12g02364 931 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 688 730 IPR000225 GO:0005515
Bva12g02364 931 MobiDBLite consensus disorder prediction 523 573 - -
Bva12g02364 931 Pfam Armadillo/beta-catenin-like repeat 761 798 IPR000225 GO:0005515
Bva12g02364 931 Pfam Armadillo/beta-catenin-like repeat 679 716 IPR000225 GO:0005515
Bva12g02364 931 Pfam Armadillo/beta-catenin-like repeat 718 757 IPR000225 GO:0005515
Bva12g02364 931 Gene3D - 629 926 IPR011989 -
Bva12g02364 931 SUPERFAMILY ARM repeat 648 920 IPR016024 -
Bva12g02364 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 408 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02364 Bva-Chr12 17947200 17957021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02364 290 931 U-box Gene Family AT2G23140 63.622 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02364 - - gmx:100811250 1222.99