Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02363 ATGCTTGGGTGCCCAGAGAGAGAAAGATTAGATGAGACAGCAAAGAAGATCAAGACAGAGATAGAAGCTTCTTGCCAAATGGGAAGGAGGCAATTTTATGGTCCAGCTTCAGGGACAACCTTAAACACTGTCACCCCTTGTGCTGCATGTAAGCTTTTGAGAAGAAGGTGTGCGGAAGAATGCCCTTTCTCTCCTTATTTCTCACCACATGAGCCTCAGAAGTTTGCTGCTGTCCATAAAGTATTTGGTGCAAGCAATGTTTCCAAGATGCTAATGGAGGTGCCTGAGAGCCAAAGAGCTGATGCAGCAAATAGCCTGGTTTGTGAAGCTAACTTGAGACTGAGAGACCCAATTTATGGATGCATGGGTGCAATTTCAGCTCTACAGCAACAAGTTCAATCTTTGCAAGCTGAACTAAATGCAGTAAGGGGTGAGAtactaaaatacaaatatagaGAGGTTGCAAATCATATCATTTCATCTCATGGTGCTTTAGTTTCTTCCGGGGAAGCACCGATCTCCGAAGAGTCACGGCAAGGTCTTCCTCaacctcctcctcctcctccaccaTCACCGCCACCGAAGCCATTACCTTCCCCTTCTATCATCCTATCATCCTTGTCTTCATCTTCAACTCCTTCTGTATACACCCCATCTAGAAGCACAATGAGCCTTGGATCTGTTTCCAGTGAACATGGGCCATACTTTGTTTA 713 0.4278 MLGCPERERLDETAKKIKTEIEASCQMGRRQFYGPASGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPESQRADAANSLVCEANLRLRDPIYGCMGAISALQQQVQSLQAELNAVRGEILKYKYREVANHIISSHGALVSSGEAPISEESRQGLPQPPPPPPPSPPPKPLPSPSIILSSLSSSSTPSVYTPSRSTMSLGSVSSEHGPYFV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02363 237 MobiDBLite consensus disorder prediction 169 237 - -
Bva12g02363 237 PRINTS Wilm's tumour protein signature 180 194 - -
Bva12g02363 237 PRINTS Wilm's tumour protein signature 128 144 - -
Bva12g02363 237 PANTHER LOB DOMAIN PROTEIN 31 236 - -
Bva12g02363 237 Pfam Lateral organ boundaries (LOB) domain 46 142 IPR004883 -
Bva12g02363 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 236 - -
Bva12g02363 237 MobiDBLite consensus disorder prediction 201 229 - -
Bva12g02363 237 MobiDBLite consensus disorder prediction 179 200 - -
Bva12g02363 237 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
Bva12g02363 237 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02363 Bva-Chr12 17935663 17936745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02363 12 153 AS2 family AT2G30340 75.510 6.16e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva12g02363 LOB 5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02363 - - ccaj:109795340 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02363 12 17935663 17936745 Bva12g02363 12 17935663 17936745 ECH