Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02343 ATGACAAGGCTTACTGCACTCCCCCAACCCACCGGACCGGACTTTCGAATTCCTCATCCCAACCAAAGCATCGTTCAGTCTCTCCCTTCGTCTCGCACTGGGCGCTCaaggaagaaaaagcaagGAACGAAAACGCAACATTCACTCTTTCTGTCGCAGCACCGTCAAAGTGATTGTTGTCTGAAGAGAGATTGTCACCCGCTGCCGCTATTTGAGGAAGAATTTACCATTCTTCTATCTTCCAGGGATCGTTCTTCGCCTCTTGATTCTATCAGGTGTTGTGGACCAGCGGTTCTGATTTTGGATTTCTCTTATCAAATGGACCCTGAACTAGCTGGTTGGATACTTGAATTCCTCCTTCGTAAGCCGGTTCCTGATCGCATAATCAAGAGGATCCTTGCATCATTACCAATTCTTGACAATGATTCTCGCTTGAAGAAAACGTTGCTTCTCAGAACTATTCAAGATGAAGTTTCTCAAGCCTTAGTTTCAGAATCTATTTTGGAATACCTAGAGGTTATTGAGGAAATTGATCGCTGTGATGGCATTTCAATAACGGAATTGATGAGGTCTGTGTATTGTGCAGTTGCAGTGGAGTGCACTGTCAAGTATCTATCAACCTCCACGGATGACAATTTAGAGTATTTCAATGCAGTCAAGAGGATTTGGAGAAGCCGGATCTGGGGAATGGAGACATCAGTTGAGGGCAGTCAATTGTTTACTAATGAATTGATTCAATGGAGGGATGATATTGAGGCTGCACTCTTAGACTTGGAATTGTGTGTGAGATTGGGGAATTTGGATACTAAAGGAGATGCACTAAGTAAACTTAGGGATTATCTGGCTGAAACCTGGGAAAACATGGGTCCTCCTTTTCTTGAAACTATGTCTGCATTCCAGAATTTGGTGCATGATTTTGAACTTAGGAATGATAGTATGATTGAACCTAATGAGGATCAGGATATAGGTGCTCTTCAGCTAAATaattgggatgaaggaagatcAGATTGTTCAACTGATACTATTGAGGACTGTGGTGCTACTCATGGGATTGAATTGGATGATGATGCAGTTTGCATAGGGGAGCAACCAGTGACACTCGGGATTCAGGACATTGAAAAATTGGAAGAGAAAGCTGGTGCTGCTGAGCTGTTAAATGATTATGAAGGAAGGTCAGAAGGTTCAACTAATGCAAGAGGGGACTGTGGTGTCGCTGATAGAATTGAATTGGATGATGATGAACGCTGCATCGAGGGGGTACCAGAGAAAGCTGCAACTTCAGATGATGGGAGTCAGGAATTGGGTGGGAGTGACTTGGCTATGCAAGAAGATGGAGTTCATGTGGAGGCTCTAGTGACAGATGAGAATCAGGCCCATGAACAATTGGATGGGAAAGCTGATACTTTTGCTGATGGAAGTCAGGAATTGAGTAGGAGTGACTTGCCTACACAGGGAGAGAGAGCTTGCATTGAGGAGGTGTTGGTGACAGACATGAACCAGGTCAATGAACAATTGGAAGAGAATGTTGATGGAAGTCAGGAATTGTGTGGGAGTGACTTGCCTCCACAGGGAGAGAGAGTTTGCCTGGAGGAGATGCCAGTGACAGATGGGAATCAGTCCAAAGAACAACTCCGAAATAAAGCTGAGACTTTGGTTGATGGAAGTCAGGAATTGGGTGGGAAAAATTTTCCTACAAAAGGAGAGACAGGAATGCAAAAGGGGAGTGGGCTGCTTAAATACAAGCATGCTGCAGCATCCTATAGACGCCTTAAGCgggttaaaattaatgatgatgCGGAAGAGGGCCCTGAAACATTGGATGGCAGTTATGACCCTTTGCCTAGTTCTGAAGTTAATAAAGTTCGGGAATCTCTTAAATCTAGTTCTTTGGAGTTAAAAGCATTAGTCAAGGATCCTCTTCCAGAAGCATTACAGAGATCTGACATTGTAAGATCCGATTTGGCGATTAAAGACATGCTTCATGAACTACCTATTGAAAACCAGAGCAAAGAAAGTTTTCAACCTAATGATGCTAATATCGGGGGAAAGTCTTCTGTTTATAAGAGCTTTGTTTGTCGGCCCAGCTTAATGGAACGGAATAGTACAGCCCAAACTTATCAGTGGAGCAATTCAATAGATGACCTACCAGGAGAAACATCAGAGTATGCTAGTAAATTTCATTTGCCTAGCCCAAAGAGAACTGATGTTTCTCCGTTGGAGAGGTATGAACCACAAAAATTCATAAGTAGGAGAAGAGCAAGAAAATGGAGTTTGCTGGAAGAGGACACACTCAGGGCTGGAGTGCAGAGgTTTGGTAAAGGGTACTGGAAGGAAATCCTAATTTCTTACCCTGATATATTTGAAGAGAGAACGGAAgtTGATCTGAAGGACAAGTGGAGAAACATGACACGATATGGTGATCAATA 2426 0.4237 MDPELAGWILEFLLRKPVPDRIIKRILASLPILDNDSRLKKTLLLRTIQDEVSQALVSESILEYLEVIEEIDRCDGISITELMRSVYCAVAVECTVKYLSTSTDDNLEYFNAVKRIWRSRIWGMETSVEGSQLFTNELIQWRDDIEAALLDLELCVRLGNLDTKGDALSKLRDYLAETWENMGPPFLETMSAFQNLVHDFELRNDSMIEPNEDQDIGALQLNNWDEGRSDCSTDTIEDCGATHGIELDDDAVCIGEQPVTLGIQDIEKLEEKAGAAELLNDYEGRSEGSTNARGDCGVADRIELDDDERCIEGVPEKAATSDDGSQELGGSDLAMQEDGVHVEALVTDENQAHEQLDGKADTFADGSQELSRSDLPTQGERACIEEVLVTDMNQVNEQLEENVDGSQELCGSDLPPQGERVCLEEMPVTDGNQSKEQLRNKAETLVDGSQELGGKNFPTKGETGMQKGSGLLKYKHAAASYRRLKRVKINDDAEEGPETLDGSYDPLPSSEVNKVRESLKSSSLELKALVKDPLPEALQRSDIVRSDLAIKDMLHELPIENQSKESFQPNDANIGGKSSVYKSFVCRPSLMERNSTAQTYQWSNSIDDLPGETSEYASKFHLPSPKRTDVSPLERYEPQKFISRRRARKWSLLEEDTLRAGVQRFGKGYWKEILISYPDIFEERTEVDLKDKWRNMTRYGDQ 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02343 702 SMART sant 646 699 IPR001005 -
Bva12g02343 702 Coils Coil 389 409 - -
Bva12g02343 702 Gene3D - 650 702 - -
Bva12g02343 702 ProSiteProfiles Myb-like domain profile. 642 697 IPR001005 -
Bva12g02343 702 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 642 701 IPR017930 -
Bva12g02343 702 PANTHER MYB TRANSCRIPTION FACTOR 1 699 - -
Bva12g02343 702 MobiDBLite consensus disorder prediction 490 509 - -
Bva12g02343 702 Pfam Myb-like DNA-binding domain 649 696 IPR001005 -
Bva12g02343 702 CDD SANT_TRF 648 698 - -
Bva12g02343 702 PANTHER MYB TRANSCRIPTION FACTOR 1 699 - -
Bva12g02343 702 SUPERFAMILY Homeodomain-like 648 699 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02343 Bva-Chr12 17825200 17833503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02343 607 696 Single Myb Histone (SMH) Gene Family AT1G15720 43.333 1.86e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva12g02343 Myb_DNA-binding 8.2e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02343 12 17825200 17833503 Bva12g02343 12 17825200 17833503 ECH