Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02341 ATGCAAGATCCGCCTTCAAACCCTAACTCCAACCCAAATTTTCACAATACCAATGTCAATGCTAATGCCATTGCTGCTTCACTCAACACCCAATTCCCGCCACCACCACTCGCCGCCTTTACCACTTCTCCGGCGACGGCGACAACATCTTCAGCTTCTTCATCGTCATCTTCCTTGTTAATCAGGAGCGGAAGAAATGGTGAAGGACCTGCTGCTTCCGGCGCTGGCGGGCCCCAGTCACAGAAGCACCACCCCCATCATAGGAGGGCCCACTCCGAAGTCAGCTTCCGTTTGTCCGACGATATAATGGATCTCTCGTTCAATGGCGGGTCATCAACGGCCAGCCTTGAAGAGATCGGATCCGAGGACGACCTCTTCTCTACCTACATTGACGTTGACAAGCTTGGAGGCGCTAATGGATCGGGTAATGGAGACAATGGATCAGATCAGAATGGTAACAGTATTGGTACAAGCAATCacaatgaaagagaaaagagccCAATTGCGAGGCCAAGGCATAGGCATAGTAACTCTGTGGATGGCTCCACATCTACAAGCATGTTTGGGGAAGTTATGGAGGCAAAGAAAGCTATGCCTCCTGATAAGTTAGCCGAGCTCTGGACAATTGATCCTAAGCGTGCCAAGAGAATACTTGCAAATCGGCAATCTGCTTCCCGTTCAAAGGAGAGAAAAGCCCATTATATACAAGAACTTGAGCGCAAAGTTCAGACCCTTCAGACTGAAGCGACAACTCTCTCTGCCCAACTTACACTCTACCAGAGGGACACAACTGGTCTTAATACTGAAAATACAGAGCTTAAGCTTCGTCTGCAAGCCATGGAGCAACAGGCACAGCTTCGAGATGCTCTTAATGAAGCATTGAAAAAGGAAGTTGAGAGGCTTAAAATTGCTACTGGGGAGATGATGAGTCCATATGAGTCTTTCAATCTGGGAATGCACCAGATGCAATTTACAgcatcaaatttttttccacTTCCACAACATTCTGGTCCTTCTGGTCACCAGAACATGCAGTTGCCACCATTTAATCAGTCATCATCTGGCATTCCAACTCATCAAATGCAACAAACAAATTCTCATCCATTCCCAGAAATGTTGCAAAATGATCAACTTGGTCGTTTGCAAGGGCTTGAAATTAGTAGCAAAGGGTCACCGCTCGTGAAGTCTGAAGGCCCCTCGCTTTCTGCGAGTGAGAGTAGCAcaacattttg 1232 0.4586 MQDPPSNPNSNPNFHNTNVNANAIAASLNTQFPPPPLAAFTTSPATATTSSASSSSSSLLIRSGRNGEGPAASGAGGPQSQKHHPHHRRAHSEVSFRLSDDIMDLSFNGGSSTASLEEIGSEDDLFSTYIDVDKLGGANGSGNGDNGSDQNGNSIGTSNHNEREKSPIARPRHRHSNSVDGSTSTSMFGEVMEAKKAMPPDKLAELWTIDPKRAKRILANRQSASRSKERKAHYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLNTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPYESFNLGMHQMQFTASNFFPLPQHSGPSGHQNMQLPPFNQSSSGIPTHQMQQTNSHPFPEMLQNDQLGRLQGLEISSKGSPLVKSEGPSLSASESSTTF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02341 410 MobiDBLite consensus disorder prediction 329 372 - -
Bva12g02341 410 CDD bZIP_plant_RF2 213 262 IPR044759 GO:0003700|GO:0006355
Bva12g02341 410 MobiDBLite consensus disorder prediction 137 186 - -
Bva12g02341 410 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 44 407 - -
Bva12g02341 410 MobiDBLite consensus disorder prediction 41 63 - -
Bva12g02341 410 SUPERFAMILY Leucine zipper domain 212 263 IPR046347 GO:0003700|GO:0006355
Bva12g02341 410 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 210 273 IPR004827 GO:0003700|GO:0006355
Bva12g02341 410 Gene3D - 211 264 - -
Bva12g02341 410 MobiDBLite consensus disorder prediction 329 410 - -
Bva12g02341 410 Coils Coil 263 307 - -
Bva12g02341 410 MobiDBLite consensus disorder prediction 163 177 - -
Bva12g02341 410 Pfam bZIP transcription factor 212 269 IPR004827 GO:0003700|GO:0006355
Bva12g02341 410 SMART brlzneu 208 272 IPR004827 GO:0003700|GO:0006355
Bva12g02341 410 MobiDBLite consensus disorder prediction 141 162 - -
Bva12g02341 410 PANTHER BZIP TRANSCRIPTION FACTOR 44 407 - -
Bva12g02341 410 Coils Coil 228 255 - -
Bva12g02341 410 MobiDBLite consensus disorder prediction 393 410 - -
Bva12g02341 410 MobiDBLite consensus disorder prediction 1 29 - -
Bva12g02341 410 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02341 Bva-Chr12 17819857 17822697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02341 85 410 bZIP Transcription Factor Family AT2G40620 51.733 4.55e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Bva12g02341 bZIP_1 1.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02341 - - gmx:100790732 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g02341 12 17819857 17822697 Bva12g02341 12 17819857 17822697 ECH