Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02339 ATGGAGGTGATTTTGGCATCTTCTTCTGTTGATGGTGGTATTGGGTGTTGGGAGCTTGAGACAGGGACTGAGCGCCTTCGCTACAAATCTTGTGCATCTCCACCTCATGGTCTCGTTTGTGTGGGCCACCGTTTCCTTGCGTCCTCTCAGCTTCGTGACTCTTCACTCTCCTCTGGCTTCCTTCTCTACTGGTCCTGCTCCAAGCCTCAAATACAAGTTATGAGCTTTCCTGCTGAACCAATTAAGCCGCTTGCTGCTAATCATCCAGGCACCTATATAGCTGGTGGAGGTTTATCGGGTCACATATACTTATGGGAGGTTGAAAGTGGCAGGTTACTTAAGAAGTGGCATGCTCATTATAGGTCTGTTACTTGCTTGGTCTTCAATGAAGATGACTCACTATTGATATCTGGTTCAGAAGATGGATCTGTACGAGTTTGGAACCTGTTCATGATATTTGATGATTTAAGAACTCGTGAAGCAAATCATCTTTATGAGCACAGTTTTTCAGAGCATACCATGCAAGTGACTGATGTTGCAATTGGTTATGGAGGATGTAATGCAATCATAGTGTCAGCATCAGAGGATCAGACCTGTAAGgTATGGAGCTTATCTAGTGGAAAGCTACTGAGAAGTGTAGTATTTCCTTCAATTACTGATGTTATTGCATTGGATCCGGCTGaacaattcttttttgctGGCAGTAGAGATGGGAAAATATTCATTGCTGCCCTTAATGCTGAAAGTGTCTCTAAAAGTGAATATGGACTGCATATTCTTGATTCCTTCTCCAACCACAGCAAGGCTGTGACTTCCTTAACATATGCCCCAagtggaaattttttaatatctggATCGGAGGATGGAATGATTCGTGTATGGAATGCAAAAACTCATAACATTGTCCGCATGTTTAAACATGGAAAAGGTCCTGTAAACAATGTTCTTGTCGTTAGACAACAACTTGACTTGAGTAATCAAATATCTCTTAATTTACAAACTTGCTCAAGAAAGCAGGGATCTTTATTACCCCTTCCattggaaaaatatacaaattcaaCAGATGAAGACCCAGATGTTAAGACTTTGGTCAGCCTCCAAGGTGGTATATCTATAGATGTTTCATACCGCAGCGCTGATCTGATTTTTAATCAGATTAAGGAACTTCAGgGTTCTTCTGCTGCTACTGAATTGGAGATGGAGAAACTTAAACTTGATTACAATAAGTCGATGCATATGGTTAACCGGTGGAAGAAAATGTACGAGAACTTGCAGCAGTTCTGTGTAAATGAGCTCTTGGATGGTGGAAAAGCTGGAACAGCAGATGAAAATGGCAACTG 1340 0.4022 MEVILASSSVDGGIGCWELETGTERLRYKSCASPPHGLVCVGHRFLASSQLRDSSLSSGFLLYWSCSKPQIQVMSFPAEPIKPLAANHPGTYIAGGGLSGHIYLWEVESGRLLKKWHAHYRSVTCLVFNEDDSLLISGSEDGSVRVWNLFMIFDDLRTREANHLYEHSFSEHTMQVTDVAIGYGGCNAIIVSASEDQTCKVWSLSSGKLLRSVVFPSITDVIALDPAEQFFFAGSRDGKIFIAALNAESVSKSEYGLHILDSFSNHSKAVTSLTYAPSGNFLISGSEDGMIRVWNAKTHNIVRMFKHGKGPVNNVLVVRQQLDLSNQISLNLQTCSRKQGSLLPLPLEKYTNSTDEDPDVKTLVSLQGGISIDVSYRSADLIFNQIKELQGSSAATELEMEKLKLDYNKSMHMVNRWKKMYENLQQFCVNELLDGGKAGTADENGN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02339 446 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 5 315 IPR011047 -
Bva12g02339 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Bva12g02339 446 Gene3D - 218 336 IPR015943 GO:0005515
Bva12g02339 446 Coils Coil 386 406 - -
Bva12g02339 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Bva12g02339 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Bva12g02339 446 PANTHER WD-REPEAT PROTEIN 18 1 432 IPR045227 -
Bva12g02339 446 PANTHER WD REPEAT-CONTAINING PROTEIN 18 1 432 - -
Bva12g02339 446 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Bva12g02339 446 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Bva12g02339 446 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Bva12g02339 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Bva12g02339 446 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Bva12g02339 446 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Bva12g02339 446 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515
Bva12g02339 446 ProSitePatterns Trp-Asp (WD) repeats signature. 135 149 IPR019775 -
Bva12g02339 446 Gene3D - 1 217 IPR015943 GO:0005515
Bva12g02339 446 SMART WD40_4 206 244 IPR001680 GO:0005515
Bva12g02339 446 SMART WD40_4 67 106 IPR001680 GO:0005515
Bva12g02339 446 SMART WD40_4 109 148 IPR001680 GO:0005515
Bva12g02339 446 SMART WD40_4 162 203 IPR001680 GO:0005515
Bva12g02339 446 SMART WD40_4 256 295 IPR001680 GO:0005515
Bva12g02339 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Bva12g02339 446 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g02339 Bva-Chr12 17811842 17817053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02339 88 305 U-box Gene Family AT1G04510 26.906 4.71e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02339 K14829 - gmx:100791195 644.425