Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g02335 ATGGCCATGTTATTGAGAAAAGTATGGGAATCGGTGTCGAACCGCTCTTGTGGGAATTCGAGCTCATCAGAACGTGTGCGTCCGATGGATTCTTCTCTGGGTGCATTCGAGCAAATTCCTTCAGATATATTGATGCAAATTCTCAAACTTTTGGGCCCTAAAGAAGTCGCAAAATTGAGCCTCGTATGCAAGGCCTGGAGATCTCTGGTTTCCGATAATCGCCTCTGGATTTCCTTCTTTCAGACCAACCACCCCGACCATCTCCCATGGgattccatttttttcacCGAAACCAATTTGAGCTGCGGTTACCCTCTTCTAACTTCCGTTCTTCGCATGCCCCAGTTATCGTTCATGAATATTTATGGCCAAAGAGCACGAGTCCCAGGTTCTATTATCATTGATGGCGGTTCTGGCTATTGCAAGTTTGGGTGGAGCAAATACGCTTGCCCATCAGGGCAATCAGCAACCTTTCTGGAATTTGGTAACATCGAGTCTCCAATGTGCACTAGACTTCGACACTTTTTCGCAACTATCTATAGCAGGATGCAAGTGAAACCGAGTACTCAACCAGTTATTGTTTCTTTACCAATATGTCATTATGATGATACTGAATCTGCCAAAGCATCGAGACGACAGCTTAAAGAAGCAATCCATGCTGCCCTGTTTAACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTGTATGCTGCAAAACGGACTTCAGGAATAGTTGTTAATATTGGTTTTCAGGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTTATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTGGGAGCACTGAAACTAACAGGATTCCTTAGGGAACGGATGCGAGAGAAAAATATGAGTTTTGAATCTTTATACACTGTGCGCACACTGAAAGagAAGCTATGCTACGTTGCTGAGGATTATGCTGCTGAACTTTCAAAAGATACACAAGCATCATTTGAAGCTGGAGGAGAAGGATGGTTTGCACTTTCAAAAGAGAGGTTTCAAACAGGAGAGATCTTATTTCAGCCTCGTCTTGCTGGGATGCAAGCAATGGGTTTGCACCAGGCCGTAGCTCTTTGTATGGACCATTGCCATGCTGCAGAGTTGGCAGGCGACAGTGATTGGTTTAAGACTGTAGTTTTATGTGGGGGCACTGCATGTTTACCAGGCCTTGCAGAGAGGTTAGAGAAGGAACTCCACAAGTTACTTCCTCCATGTGTGTCCAATGGAATCAAAGTCATTCCACCTCTATATGGTGCGGATACTGCATGGTTTGGAGGAAAGCTTATTGGCAATCTGAGCACCTTTCCTGGTCGCTGGTGTATGACAAAGAAACAGTTTAATCAGAAGTCTAGGCTCAAACTCATATGGTG 1409 0.4422 MAMLLRKVWESVSNRSCGNSSSSERVRPMDSSLGAFEQIPSDILMQILKLLGPKEVAKLSLVCKAWRSLVSDNRLWISFFQTNHPDHLPWDSIFFTETNLSCGYPLLTSVLRMPQLSFMNIYGQRARVPGSIIIDGGSGYCKFGWSKYACPSGQSATFLEFGNIESPMCTRLRHFFATIYSRMQVKPSTQPVIVSLPICHYDDTESAKASRRQLKEAIHAALFNMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLRERMREKNMSFESLYTVRTLKEKLCYVAEDYAAELSKDTQASFEAGGEGWFALSKERFQTGEILFQPRLAGMQAMGLHQAVALCMDHCHAAELAGDSDWFKTVVLCGGTACLPGLAERLEKELHKLLPPCVSNGIKVIPPLYGADTAWFGGKLIGNLSTFPGRWCMTKKQFNQKSRLKLIW 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g02335 469 PANTHER ACTIN-RELATED PROTEIN 8 90 465 - -
Bva12g02335 469 Gene3D - 23 104 - -
Bva12g02335 469 SUPERFAMILY Actin-like ATPase domain 245 460 IPR043129 -
Bva12g02335 469 Gene3D - 236 434 - -
Bva12g02335 469 Gene3D Actin; Chain A, domain 4 279 362 - -
Bva12g02335 469 CDD NBD_sugar-kinase_HSP70_actin 132 276 - -
Bva12g02335 469 Pfam Actin 178 461 IPR004000 -
Bva12g02335 469 PANTHER ACTIN 90 465 IPR004000 -
Bva12g02335 469 SUPERFAMILY Actin-like ATPase domain 131 251 IPR043129 -
Bva12g02335 469 ProSiteProfiles F-box domain profile. 33 79 IPR001810 GO:0005515
Bva12g02335 469 SMART actin_3 129 459 IPR004000 -
Bva12g02335 469 Gene3D - 175 461 - -
Bva12g02335 469 SMART fbox_2 39 79 IPR001810 GO:0005515
Bva12g02335 469 Pfam F-box domain 37 77 IPR001810 GO:0005515
Bva12g02335 469 SUPERFAMILY F-box domain 30 93 IPR036047 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g02335 178 461 Cytoskeleton Gene Families AT3G12110 31.741 2.36e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g02335 K16616 - gmx:100791973 727.628